ggKbase home page

L3_106_000M1_scaffold_1601

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1601_1
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

109..363
DNA (255bp) protein (85aa)
TfoX domain-containing protein n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LIV9_TREBD
TfoX domain-containing protein
TfoX domain-containing protein {ECO:0000313|EMBL:AEE16284.1}; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
L3_106_000M1_scaffold_1601_2
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(896..2014)
DNA (1119bp) protein (373aa)
Putative coproporphyrinogen dehydrogenase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6S3_9FIRM
Putative coproporphyrinogen dehydrogenase {ECO:0000313|EMBL:CDB42189.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
oxygen-independent coproporphyrinogen III oxidase
L3_106_000M1_scaffold_1601_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2093..3142)
DNA (1050bp) protein (350aa)
dapB2; dihydrodipicolinate reductase DapB2 (EC:1.3.1.26)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6KM89_9CLOT
Dihydrodipicolinate reductase {ECO:0000313|EMBL:ENZ13191.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_106_000M1_scaffold_1601_4
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3268..3975)
DNA (708bp) protein (236aa)
ThiF family protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I444_9FIRM
ThiF family protein {ECO:0000313|EMBL:CDB41269.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
UBA/THIF-type NAD/FAD-binding protein
L3_106_000M1_scaffold_1601_5
Paenibacillus terrae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4196..4873
DNA (678bp) protein (226aa)
Peptide ABC transporter ATPase n=1 Tax=Paenibacillus terrae (strain HPL-003) RepID=G7W3E5_PAETH
peptide ABC transporter ATPase
Peptide ABC transporter ATPase {ECO:0000313|EMBL:AET57408.1}; TaxID=985665 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus terrae (strain HPL-003).;"
L3_106_000M1_scaffold_1601_6
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4870..7401
DNA (2532bp) protein (844aa)
FtsX-like permease family protein n=1 Tax=Clostridium difficile CD104 RepID=T3AT47_CLODI
ABC transporter permease
Uncharacterized protein {ECO:0000313|EMBL:CCZ25799.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_106_000M1_scaffold_1601_7
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

7597..10038
DNA (2442bp) protein (814aa)
F5/8 type C domain protein n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NVA7_9FIRM
F5/8 type C domain protein {ECO:0000313|EMBL:EEF92840.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
hypothetical protein
L3_106_000M1_scaffold_1601_8
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10203..11693)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=2 Tax=Enterococcus RepID=T2NLL1_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:EPH61868.1}; TaxID=1259824 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium 13.SD.W.09.;"
hypothetical protein
L3_106_000M1_scaffold_1601_9
unknown

Not on your lists

comp(12157..12918)
DNA (762bp) protein (254aa)
Predicted transcriptional regulators n=2 Tax=Clostridiales RepID=D4N062_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CBL38257.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_106_000M1_scaffold_1601_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12911..13822)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YQA7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ09987.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
hypothetical protein
L3_106_000M1_scaffold_1601_11
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14253..15020)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EE60_9FIRM
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AKA67856.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L3_106_000M1_scaffold_1601_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15267..15614)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Clostridium sp. JC122 RepID=UPI000289F521
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKN41054.1}; TaxID=1232189 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum CFSAN001627.;"
L3_106_000M1_scaffold_1601_13
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16292..16882
DNA (591bp) protein (197aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor n=2 Tax=root RepID=R5MNG5_9FIRM
L3_106_000M1_scaffold_1601_14
unknown

Not on your lists

comp(17428..17595)
DNA (168bp) protein (56aa)

This feature has no annotations

L3_106_000M1_scaffold_1601_15
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17719..18930)
DNA (1212bp) protein (404aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
aspartate kinase, monofunctional class (EC:2.7.2.4)
Aspartokinase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NIN8_9CLOT
L3_106_000M1_scaffold_1601_16
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18949..20187)
DNA (1239bp) protein (413aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Homoserine dehydrogenase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8L3_9FIRM
homoserine dehydrogenase
L3_106_000M1_scaffold_1601_17
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20511..21713
DNA (1203bp) protein (401aa)
Sporulation integral membrane protein YtvI n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IUW8_9FIRM
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:CDB41782.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
sporulation integral membrane protein
L3_106_000M1_scaffold_1601_18
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21995..22537
DNA (543bp) protein (181aa)
Putative stage V sporulation protein T n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKG7_9CLOT
Putative stage V sporulation protein T {ECO:0000313|EMBL:CDC12638.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
transcriptional regulator, AbrB family
L3_106_000M1_scaffold_1601_19
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22998..23744
DNA (747bp) protein (249aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
MTA/SAH nucleosidase n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZ11_9FIRM
MTA/SAH nucleosidase
L3_106_000M1_scaffold_1601_20
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23867..24292)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42318.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_106_000M1_scaffold_1601_21
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24449..25540)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42328.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Protein of unknown function (DUF3048).
L3_106_000M1_scaffold_1601_22
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25983..26462
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8I9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41751.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_106_000M1_scaffold_1601_23
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26735..27640)
DNA (906bp) protein (302aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=2 Tax=root RepID=R5MGM2_9FIRM
L3_106_000M1_scaffold_1601_24
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27669..28844)
DNA (1176bp) protein (392aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
argD; Acetylornithine aminotransferase (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MZT4_9FIRM
L3_106_000M1_scaffold_1601_25
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28859..29713)
DNA (855bp) protein (285aa)
argB; Acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Acetylglutamate kinase n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U654_ETHHY
L3_106_000M1_scaffold_1601_26
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29774..31003)
DNA (1230bp) protein (410aa)
argJ; Arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.35)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MGN4_9FIRM
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L3_106_000M1_scaffold_1601_27
Exiguobacterium sp. AT1b, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31024..31308)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) RepID=C4KYQ2_EXISA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACQ70215.1}; Flags: Precursor;; TaxID=360911 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b).;"
L3_106_000M1_scaffold_1601_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31357..32391)
DNA (1035bp) protein (345aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037F5573
L3_106_000M1_scaffold_1601_29
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(32406..33785)
DNA (1380bp) protein (460aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZK68_9FIRM
L3_106_000M1_scaffold_1601_30
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33913..35139)
DNA (1227bp) protein (409aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IY35_9FIRM
Displaying items 1-30 of 34 in total

View Taxonomy