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L3_106_000M1_scaffold_1840

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1840_1
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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211..1035
DNA (825bp) protein (275aa)
Transcriptional regulator, MerR family n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R3B1_CLOSW
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ADL04860.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_106_000M1_scaffold_1840_2
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1166..1690)
DNA (525bp) protein (175aa)
Nitroreductase n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DI81_CLOSC
Nitroreductase
Nitroreductase {ECO:0000313|EMBL:CBK77405.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_106_000M1_scaffold_1840_3
Porphyromonas gulae, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1832..3793)
DNA (1962bp) protein (654aa)
NAD(P) transhydrogenase subunit beta n=1 Tax=Treponema pedis str. T A4 RepID=S5ZVB0_9SPIO
NADP transhydrogenase subunit beta {ECO:0000313|EMBL:KGN94586.1}; TaxID=111105 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas gulae.;"
NAD/NADP transhydrogenase subunit beta
L3_106_000M1_scaffold_1840_4
Porphyromonas macacae, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3786..4088)
DNA (303bp) protein (101aa)
pntAA1; NAD(P) transhydrogenase subunit alpha, part 2 (EC:1.6.1.2)
hypothetical protein n=1 Tax=Porphyromonas macacae RepID=UPI000380CB0C
Pyridine nucleotide transhydrogenase {ECO:0000313|EMBL:KGN72442.1}; TaxID=28115 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas macacae.;"
L3_106_000M1_scaffold_1840_5
Treponema denticola, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(4166..5323)
DNA (1158bp) protein (386aa)
NAD(P)(+) transhydrogenase (AB-specific), alpha subunit n=7 Tax=Treponema denticola RepID=M2ACU4_TREDN
NAD(P)(+) transhydrogenase (AB-specific), alpha subunit {ECO:0000313|EMBL:EMB46398.1}; TaxID=999426 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema denticola AL-2.;"
NADP oxidoreductase
L3_106_000M1_scaffold_1840_6
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5406..5861)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXR9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41840.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
transcriptional regulator
L3_106_000M1_scaffold_1840_7
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6288..7409)
DNA (1122bp) protein (374aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Clostridium sp. CAG:352 RepID=R6R148_9CLOT
L3_106_000M1_scaffold_1840_8
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7409..9115)
DNA (1707bp) protein (569aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
leuA1; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Clostridium sp. CAG:678 RepID=R5KIZ0_9CLOT
L3_106_000M1_scaffold_1840_9
unknown

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comp(9475..9624)
DNA (150bp) protein (50aa)

This feature has no annotations

L3_106_000M1_scaffold_1840_10
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9621..10502)
DNA (882bp) protein (294aa)
Xyloside transporter n=1 Tax=Clostridium sp. CAG:678 RepID=R5KPD1_9CLOT
Xyloside transporter {ECO:0000313|EMBL:CCY66939.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
L3_106_000M1_scaffold_1840_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11063..11350)
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=2 Tax=root RepID=D4JRE3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95662.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_106_000M1_scaffold_1840_12
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11352..12125)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037E226F
Uncharacterized protein {ECO:0000313|EMBL:CDC05497.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_106_000M1_scaffold_1840_13
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12122..12847)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6NB59_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05499.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_106_000M1_scaffold_1840_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12844..13599)
DNA (756bp) protein (252aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JRE0_9FIRM
ABC-type multidrug transport system, ATPase component
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:CBK95659.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_106_000M1_scaffold_1840_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13749..14450
DNA (702bp) protein (234aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JRD9_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBK95658.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_106_000M1_scaffold_1840_16
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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14534..15928
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein n=1 Tax=Blautia producta RepID=UPI0003795DD9
Signal transduction histidine kinase
L3_106_000M1_scaffold_1840_17
Enterococcus villorum, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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16209..17705
DNA (1497bp) protein (499aa)
AraC family transcriptional regulator n=1 Tax=Enterococcus villorum ATCC 700913 RepID=R2SKY5_9ENTE
AraC family transcriptional regulator {ECO:0000313|EMBL:EOH93486.1}; TaxID=1158604 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus villorum ATCC 700913.;"
AraC family transcriptional regulator
L3_106_000M1_scaffold_1840_18
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17717..18709
DNA (993bp) protein (331aa)
zinc-containing alcohol dehydrogenase (EC:1.1.1.-)
Zinc-containing alcohol dehydrogenase {ECO:0000313|EMBL:ADK15642.1}; EC=1.1.1.- {ECO:0000313|EMBL:ADK15642.1};; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
Zinc-containing alcohol dehydrogenase n=2 Tax=Clostridium RepID=D8GM68_CLOLD
L3_106_000M1_scaffold_1840_19
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18994..19860
DNA (867bp) protein (289aa)
Transketolase (EC:2.2.1.1)
Transketolase domain protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MPL8_9FIRM
Transketolase domain protein {ECO:0000313|EMBL:CCY91619.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L3_106_000M1_scaffold_1840_20
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19866..20852
DNA (987bp) protein (329aa)
Transketolase domain protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N355_9FIRM
Transketolase domain protein {ECO:0000313|EMBL:CCY91617.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
transketolase subunit B
L3_106_000M1_scaffold_1840_21
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21089..22363
DNA (1275bp) protein (425aa)
Major facilitator superfamily MFS_1 n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N220_9FIRM
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCY91616.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
sugar phosphate permease
L3_106_000M1_scaffold_1840_22
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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22391..23785
DNA (1395bp) protein (465aa)
Transporter, major facilitator family protein n=1 Tax=Salmonella enterica subsp. enterica serovar Infantis str. SARB27 RepID=G4BYB9_SALIN
Transporter, major facilitator family protein {ECO:0000313|EMBL:EHB43282.1}; TaxID=596155 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Infantis str. SARB27.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L3_106_000M1_scaffold_1840_23
Mycoplasma sp. CAG:956, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

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23799..24821
DNA (1023bp) protein (341aa)
Zinc-containing dehydrogenase family protein n=1 Tax=Mycoplasma sp. CAG:956 RepID=R5MWS0_9MOLU
Zinc-containing dehydrogenase family protein {ECO:0000313|EMBL:CCY89422.1}; TaxID=1262908 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma; environmental samples.;" source="Mycoplasma sp. CAG:956.;"
2,3-butanediol dehydrogenase, R-alcohol forming, - and -acetoin-specific
L3_106_000M1_scaffold_1840_24
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24836..25651
DNA (816bp) protein (272aa)
Glucose 1-dehydrogenase 2 {ECO:0000313|EMBL:KJJ75039.1}; EC=1.1.1.47 {ECO:0000313|EMBL:KJJ75039.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
Sorbose reductase SOU1 (Sorbitol utilization proteinSOU1) n=1 Tax=Clostridium sp. D5 RepID=F0YVV4_9CLOT
oxidoreductase, short chain dehydrogenase/reductase family
L3_106_000M1_scaffold_1840_25
unknown

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comp(25681..25794)
DNA (114bp) protein (38aa)

This feature has no annotations

L3_106_000M1_scaffold_1840_26
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26376..26690)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NHR5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11673.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_106_000M1_scaffold_1840_27
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26862..28094
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HG70_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97898.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
L3_106_000M1_scaffold_1840_28
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(28112..28627)
DNA (516bp) protein (172aa)
Cytoplasmic protein n=1 Tax=Bacillus cereus HuA2-9 RepID=R8CUE0_BACCE
Cytoplasmic protein {ECO:0000313|EMBL:EOO15182.1}; TaxID=1053204 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus HuA2-9.;"
hypothetical protein
L3_106_000M1_scaffold_1840_29
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28761..29336)
DNA (576bp) protein (192aa)
Phosphate propanoyltransferase {ECO:0000256|PIRNR:PIRNR010130}; EC=2.3.1.222 {ECO:0000256|PIRNR:PIRNR010130};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Phosphate propanoyltransferase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I5C2_9FIRM
Propanediol utilization protein
L3_106_000M1_scaffold_1840_30
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29501..30106
DNA (606bp) protein (202aa)
uracil-DNA glycosylase, family 4 (EC:2.7.7.7)
Uracil-DNA glycosylase family 4 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NNL0_9CLOT
Uracil-DNA glycosylase family 4 {ECO:0000313|EMBL:CDC09974.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Displaying items 1-30 of 34 in total

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