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L3_106_000M1_scaffold_2638

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2638_1
unknown

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323..883
DNA (561bp) protein (187aa)

This feature has no annotations

L3_106_000M1_scaffold_2638_2
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1082..3022)
DNA (1941bp) protein (647aa)
Chaperone protein HtpG n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHS4_9CLOT
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Molecular chaperone, HSP90 family
L3_106_000M1_scaffold_2638_3
unknown

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3249..3440
DNA (192bp) protein (64aa)

This feature has no annotations

L3_106_000M1_scaffold_2638_4
unknown

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3992..4588
DNA (597bp) protein (199aa)

This feature has no annotations

L3_106_000M1_scaffold_2638_5
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4563..6287)
DNA (1725bp) protein (575aa)
beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MRM5_9FIRM
Beta-galactosidase {ECO:0000313|EMBL:CCY92374.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L3_106_000M1_scaffold_2638_6
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6670..8709)
DNA (2040bp) protein (680aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|SAAS:SAAS00096570};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HTL6_9FIRM
hydroxymethylbutenyl pyrophosphate reductase
L3_106_000M1_scaffold_2638_7
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8697..9341)
DNA (645bp) protein (215aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Acyltransferase n=2 Tax=root RepID=R5MMF4_9FIRM
hypothetical protein
L3_106_000M1_scaffold_2638_8
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9338..10090)
DNA (753bp) protein (251aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
cmk; Cytidylate kinase (EC:2.7.4.25)
Cytidylate kinase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XUS5_9FIRM
L3_106_000M1_scaffold_2638_9
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10087..11334)
DNA (1248bp) protein (416aa)
Flavoprotein family protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I723_9FIRM
Flavoprotein family protein {ECO:0000313|EMBL:CDB41211.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_106_000M1_scaffold_2638_10
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11324..12205)
DNA (882bp) protein (294aa)
Transcriptional regulator RpiR family n=3 Tax=root RepID=R5MME7_9FIRM
Transcriptional regulator RpiR family {ECO:0000313|EMBL:CCY92930.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
RpiR family transcriptional regulator
L3_106_000M1_scaffold_2638_11
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12433..12975)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N511_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY92661.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
L3_106_000M1_scaffold_2638_12
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(13049..13654)
DNA (606bp) protein (202aa)
DnaJ domain protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZLN8_9FIRM
DnaJ domain protein {ECO:0000313|EMBL:CDD31372.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
heat shock protein DnaJ domain-containing protein
L3_106_000M1_scaffold_2638_13
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13704..14579)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MLN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY92665.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
L3_106_000M1_scaffold_2638_14
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14667..15323)
DNA (657bp) protein (219aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N7G1_9CLOT
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:CDC04334.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
cyclic nucleotide-binding protein
L3_106_000M1_scaffold_2638_15
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15504..16205
DNA (702bp) protein (234aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWL5_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDO60162.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
4Fe-4S ferredoxin
L3_106_000M1_scaffold_2638_16
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16389..17714)
DNA (1326bp) protein (442aa)
GTPase Der n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YFI4_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
engA; GTP-binding protein EngA
L3_106_000M1_scaffold_2638_17
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17753..19072)
DNA (1320bp) protein (440aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Clostridium leptum CAG:27 RepID=R6P251_9CLOT
Putative FeS-containing Cyanobacterial-specific oxidoreductase {ECO:0000313|EMBL:EDO62863.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_106_000M1_scaffold_2638_18
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19235..19417)
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IB95_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_106_000M1_scaffold_2638_19
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19459..19953)
DNA (495bp) protein (165aa)
Putative ACR COG1399 n=1 Tax=Clostridium leptum CAG:27 RepID=R6N6P1_9CLOT
Putative ACR COG1399 {ECO:0000313|EMBL:CDC04024.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Predicted metal-binding, possibly nucleic acid-binding protein
L3_106_000M1_scaffold_2638_20
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20136..20552)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N702_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY92952.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
L3_106_000M1_scaffold_2638_21
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20607..21950)
DNA (1344bp) protein (448aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NGP6_9FIRM
L3_106_000M1_scaffold_2638_22
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22096..23352)
DNA (1257bp) protein (419aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6ITC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41252.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Displaying 22 items

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