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L3_106_000M1_scaffold_3240

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_3240_1
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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699..1601
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E4W7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA91651.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
L3_106_000M1_scaffold_3240_2
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1728..2645
DNA (918bp) protein (306aa)
Putative oxidoreductase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U352_9CLOT
Putative oxidoreductase {ECO:0000313|EMBL:EKQ55531.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
putative oxidoreductase
L3_106_000M1_scaffold_3240_3
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2842..3510
DNA (669bp) protein (223aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
deoC; deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PX97_9FIRM
L3_106_000M1_scaffold_3240_4
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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3527..4261
DNA (735bp) protein (245aa)
Purine nucleoside phosphorylase DeoD-type {ECO:0000256|HAMAP-Rule:MF_01627}; Short=PNP {ECO:0000256|HAMAP-Rule:MF_01627};; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01627};; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
purine-nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase DeoD-type n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DWT6_9FIRM
L3_106_000M1_scaffold_3240_5
unknown

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comp(4319..4723)
DNA (405bp) protein (135aa)

This feature has no annotations

L3_106_000M1_scaffold_3240_6
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4773..7886)
DNA (3114bp) protein (1038aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I4J4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41414.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Alpha-mannosidase
L3_106_000M1_scaffold_3240_7
unknown

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8140..8427
DNA (288bp) protein (96aa)

This feature has no annotations

L3_106_000M1_scaffold_3240_8
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8488..10236)
DNA (1749bp) protein (583aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9L927_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS54881.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_106_000M1_scaffold_3240_9
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10233..11972)
DNA (1740bp) protein (580aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N262_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDC05120.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_106_000M1_scaffold_3240_10
unknown

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12663..13229
DNA (567bp) protein (189aa)

This feature has no annotations

L3_106_000M1_scaffold_3240_11
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13387..14373
DNA (987bp) protein (329aa)
Biotin/acetyl-CoA-carboxylase ligase n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T1A1_SYNGF
biotin--acetyl-CoA-carboxylase ligase
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
L3_106_000M1_scaffold_3240_12
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14384..14995)
DNA (612bp) protein (204aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M690_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL26752.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_106_000M1_scaffold_3240_13
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15156..17525)
DNA (2370bp) protein (790aa)
GPH family xyloside:cation symporter n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YGA0_9FIRM
GPH family xyloside:cation symporter {ECO:0000313|EMBL:CDA20351.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
L3_106_000M1_scaffold_3240_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17874..18482)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000365ECD3
Peptidase, M50 domain protein {ECO:0000313|EMBL:EJF40050.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_106_000M1_scaffold_3240_15
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18472..19428)
DNA (957bp) protein (319aa)
Peptidase M23 n=1 Tax=Clostridium sp. CAG:413 RepID=R6PU22_9CLOT
Peptidase M23 {ECO:0000313|EMBL:CDC13292.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
peptidase M23
Displaying 15 items

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