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L3_106_000M1_scaffold_3631

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_3631_1
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(287..2074)
DNA (1788bp) protein (596aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E2P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA91499.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
hypothetical protein
L3_106_000M1_scaffold_3631_2
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2253..3170)
DNA (918bp) protein (306aa)
ABC transporter system permease n=1 Tax=Clostridium sp. CAG:413 RepID=R6P2A2_9CLOT
ABC transporter system permease {ECO:0000313|EMBL:CDC12611.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
SufBD protein
L3_106_000M1_scaffold_3631_3
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3201..3944)
DNA (744bp) protein (248aa)
FeS assembly ATPase SufC n=1 Tax=Clostridium sp. CAG:413 RepID=R6PS69_9CLOT
FeS assembly ATPase SufC {ECO:0000313|EMBL:CDC12612.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ABC transporter ATP-binding protein
L3_106_000M1_scaffold_3631_4
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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4066..5136
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KBY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN40130.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
oxidoreductase domain-containing protein
L3_106_000M1_scaffold_3631_5
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5215..6417)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K6Y5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42126.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
aldo/keto reductase
L3_106_000M1_scaffold_3631_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6496..7449)
DNA (954bp) protein (318aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L-lactate dehydrogenase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RTE8_9FIRM
L-lactate dehydrogenase
L3_106_000M1_scaffold_3631_7
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7700..8080)
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NEH4_9CLOT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
LSU ribosomal protein L12P
L3_106_000M1_scaffold_3631_8
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8125..8658)
DNA (534bp) protein (178aa)
50S ribosomal protein L10 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NWC7_9CLOT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
rplJ; ribosomal protein L10
L3_106_000M1_scaffold_3631_9
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8951..9652)
DNA (702bp) protein (234aa)
50S ribosomal protein L1 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NQC3_9CLOT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
rplA; 50S ribosomal protein L1
L3_106_000M1_scaffold_3631_10
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9708..10133)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Clostridium sp. CAG:217 RepID=R6ILN4_9CLOT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
rplK; ribosomal protein L11
L3_106_000M1_scaffold_3631_11
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10277..10828)
DNA (552bp) protein (184aa)
Transcription termination/antitermination protein NusG n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N1K0_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
NusG antitermination factor
L3_106_000M1_scaffold_3631_12
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10857..11282)
DNA (426bp) protein (142aa)
Protein translocase subunit SecE n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XYV9_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
preprotein translocase, SecE subunit, bacterial
L3_106_000M1_scaffold_3631_13
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11300..11449)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NS90_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
LSU ribosomal protein L33P
L3_106_000M1_scaffold_3631_14
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12013..12639)
DNA (627bp) protein (209aa)
DNA-binding helix-turn-helix protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDG2_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDS10514.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_106_000M1_scaffold_3631_15
unknown

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13400..13954
DNA (555bp) protein (185aa)

This feature has no annotations

L3_106_000M1_scaffold_3631_16
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13970..14650
DNA (681bp) protein (227aa)
Transporter n=1 Tax=Clostridium tetani (strain Massachusetts / E88) RepID=Q894W5_CLOTE
transporter
Transporter {ECO:0000313|EMBL:AAO35977.1}; TaxID=212717 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetani (strain Massachusetts / E88).;"
L3_106_000M1_scaffold_3631_17
unknown

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14647..17220
DNA (2574bp) protein (858aa)

This feature has no annotations

L3_106_000M1_scaffold_3631_18
unknown

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comp(17058..17435)
DNA (378bp) protein (126aa)

This feature has no annotations

Displaying 18 items

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