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L3_106_000M1_scaffold_319

Search features with annotation key words

Displaying items 1-30 of 125 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_319_1
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..350
DNA (348bp) protein (116aa)
Efflux ABC transporter, permease protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YVK2_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:ERI63588.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
putative drug efflux ABC transporter permease protein
L3_106_000M1_scaffold_319_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

373..2748
DNA (2376bp) protein (792aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48138.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative surface layer protein
L3_106_000M1_scaffold_319_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2982..3317
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B8N9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56095.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_106_000M1_scaffold_319_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3323..3598
DNA (276bp) protein (92aa)
Uncharacterized protein {ECO:0000313|EMBL:KGF56094.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_106_000M1_scaffold_319_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3611..3883
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YLG6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM54831.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_106_000M1_scaffold_319_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4113..5006)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48143.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_319_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5538..6359)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48142.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_319_8
unknown

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comp(6347..6442)
DNA (96bp) protein (32aa)

This feature has no annotations

L3_106_000M1_scaffold_319_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6623..7426)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48141.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_319_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7426..8364)
DNA (939bp) protein (313aa)
Antibiotic transport system ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA6_9FIRM
Antibiotic transport system ATP-binding protein {ECO:0000313|EMBL:EGJ48140.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
bcrA; bacitracin ABC transporter ATP-binding protein
L3_106_000M1_scaffold_319_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8493..9320)
DNA (828bp) protein (276aa)
rrmA; ribosomal RNA large subunit methyltransferase A (EC:2.1.1.51)
23S rRNA (Guanine745-N1)-methyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA5_9FIRM
23S rRNA (Guanine745-N1)-methyltransferase {ECO:0000313|EMBL:EGJ48139.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_319_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9474..9914)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47523.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Predicted membrane protein
L3_106_000M1_scaffold_319_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9904..10866)
DNA (963bp) protein (321aa)
Dolichol-phosphate mannosyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAZ4_9FIRM
Dolichol-phosphate mannosyltransferase {ECO:0000313|EMBL:EGJ47522.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Glycosyltransferases involved in cell wall biogenesis
L3_106_000M1_scaffold_319_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10871..12475)
DNA (1605bp) protein (535aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47521.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_319_15
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12509..12976)
DNA (468bp) protein (156aa)
Predicted flavin-nucleotide-binding protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LBF7_RUMC1
Predicted flavin-nucleotide-binding protein
Uncharacterized protein {ECO:0000313|EMBL:EOS66569.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_106_000M1_scaffold_319_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12978..13517)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9F6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48203.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_319_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13725..13841
DNA (117bp) protein (39aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9F4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48201.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_319_18
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13871..15391)
DNA (1521bp) protein (507aa)
Putative integrase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KPX9_OSCVS
putative integrase
Putative integrase {ECO:0000313|EMBL:BAK99613.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_106_000M1_scaffold_319_19
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15566..16774
DNA (1209bp) protein (403aa)
Fic family protein n=1 Tax=Eubacterium sp. CAG:786 RepID=R5GRF3_9FIRM
Fic family protein {ECO:0000313|EMBL:CCY18334.1}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
hypothetical protein
L3_106_000M1_scaffold_319_20
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16860..17231)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NRS3_9FIRM
Putative cytosolic protein {ECO:0000313|EMBL:EWM11457.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
L3_106_000M1_scaffold_319_21
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17354..18235)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Bacillus cereus AH1271 RepID=C2Z0L2_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EEL78975.1}; TaxID=526992 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus AH1271.;"
hypothetical protein
L3_106_000M1_scaffold_319_22
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18235..18648)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6EG79_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA89007.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
hypothetical protein predicted by Glimmer/Critica
L3_106_000M1_scaffold_319_23
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18641..19177)
DNA (537bp) protein (179aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2A8Y9_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI62239.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
putative Xre family DNA-binding protein
L3_106_000M1_scaffold_319_24
unknown

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comp(19674..20042)
DNA (369bp) protein (123aa)

This feature has no annotations

L3_106_000M1_scaffold_319_25
unknown

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20182..20526
DNA (345bp) protein (115aa)

This feature has no annotations

L3_106_000M1_scaffold_319_26
unknown

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20538..20936
DNA (399bp) protein (133aa)

This feature has no annotations

L3_106_000M1_scaffold_319_27
unknown

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21069..21191
DNA (123bp) protein (41aa)

This feature has no annotations

L3_106_000M1_scaffold_319_28
unknown

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21303..21566
DNA (264bp) protein (88aa)

This feature has no annotations

L3_106_000M1_scaffold_319_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21572..22351
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AS80_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF56682.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
helix-turn-helix domain protein
L3_106_000M1_scaffold_319_30
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22345..23712
DNA (1368bp) protein (456aa)
dnaB; replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=2 Tax=Oscillibacter RepID=U2SBV6_9FIRM
Replicative DNA helicase {ECO:0000313|EMBL:ERK63053.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
Displaying items 1-30 of 125 in total

View Taxonomy