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L3_106_000M1_scaffold_3056

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_3056_1
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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389..946
DNA (558bp) protein (186aa)
Putative proton-coupled thiamine transporter YuaJ n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5H9K5_9FIRM
Putative proton-coupled thiamine transporter YuaJ {ECO:0000313|EMBL:CCY26168.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
putative thiamine transporter
L3_106_000M1_scaffold_3056_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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978..1787
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45569.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_3056_3
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1941..2288
DNA (348bp) protein (116aa)
Peptidase M56 BlaR1 n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UHV9_9FIRM
Peptidase M56 BlaR1 {ECO:0000313|EMBL:CDC70387.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_106_000M1_scaffold_3056_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2747..4072
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RY29_9FIRM
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rnfC; electron transport complex protein RnfC
L3_106_000M1_scaffold_3056_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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4069..5724
DNA (1656bp) protein (552aa)
Electron transport complex protein RnfD n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5S055_9FIRM
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rnfD; electron transport complex protein RnfD
L3_106_000M1_scaffold_3056_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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5758..6342
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45853.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
RnfABCDGE type electron transport complex subunit A
L3_106_000M1_scaffold_3056_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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6491..6694
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46133.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
transcriptional regulator, XRE family
L3_106_000M1_scaffold_3056_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6691..7107
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFB1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46131.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_3056_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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7104..8018
DNA (915bp) protein (305aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
pseudouridine synthase (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFA9_9FIRM
L3_106_000M1_scaffold_3056_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8224..9102)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC96_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48130.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
radical SAM protein
L3_106_000M1_scaffold_3056_11
unknown

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9143..9496
DNA (354bp) protein (118aa)

This feature has no annotations

L3_106_000M1_scaffold_3056_12
unknown

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comp(9868..10065)
DNA (198bp) protein (66aa)

This feature has no annotations

L3_106_000M1_scaffold_3056_13
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(10157..10354)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YCM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13352.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_106_000M1_scaffold_3056_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10360..11052)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48132.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
two component transcriptional regulator
L3_106_000M1_scaffold_3056_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11127..12389)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48133.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_3056_16
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12417..12881)
DNA (465bp) protein (155aa)
Acetyltransferase, GNAT family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9I7_9CLOT
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EEG31897.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
N-acetyltransferase GCN5
L3_106_000M1_scaffold_3056_17
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(12878..13786)
DNA (909bp) protein (303aa)
Putative phenazine biosynthesis PhzC/PhzF family protein n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GSC7_SELRL
putative phenazine biosynthesis PhzC/PhzF family protein
Putative phenazine biosynthesis PhzC/PhzF family protein {ECO:0000313|EMBL:BAL83664.1}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
L3_106_000M1_scaffold_3056_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13802..14509)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48134.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_3056_19
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14522..14920)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FJJ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMS72315.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hypothetical protein
L3_106_000M1_scaffold_3056_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14939..15595)
DNA (657bp) protein (219aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA1_9FIRM
L3_106_000M1_scaffold_3056_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15870..17123
DNA (1254bp) protein (418aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glyA; Serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA2_9FIRM
L3_106_000M1_scaffold_3056_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17475..19166
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48137.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative drug efflux protein
L3_106_000M1_scaffold_3056_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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19182..19877
DNA (696bp) protein (232aa)
ABC transporter, ATP-binding protein n=4 Tax=Clostridiales RepID=G9YVK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54895.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative drug efflux ABC transporter ATP-binding protein
L3_106_000M1_scaffold_3056_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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19874..20860
DNA (987bp) protein (329aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CDZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54896.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative drug efflux ABC transporter permease protein
Displaying 24 items

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