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L3_106_000M1_scaffold_3966

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_3966_1
unknown

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comp(3..149)
DNA (147bp) protein (49aa)

This feature has no annotations

L3_106_000M1_scaffold_3966_2
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(189..545)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CI19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO29721.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
transposase IS66
L3_106_000M1_scaffold_3966_3
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(539..880)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002DFA8B3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF09447.1}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
L3_106_000M1_scaffold_3966_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(948..2618)
DNA (1671bp) protein (557aa)
putative RNA methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA95_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EGJ47273.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_3966_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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3020..3697
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9P9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47077.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
response regulator receiver
L3_106_000M1_scaffold_3966_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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3728..4993
DNA (1266bp) protein (422aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9Q0_9FIRM
ATP-binding protein
L3_106_000M1_scaffold_3966_7
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5091..5603)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KHK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS45721.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
nimA; 5-nitroimidazole resistance protein NimA
L3_106_000M1_scaffold_3966_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5737..6462)
DNA (726bp) protein (242aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD40_9FIRM
L3_106_000M1_scaffold_3966_9
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6459..7475)
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CEU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO33034.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_106_000M1_scaffold_3966_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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7639..8661
DNA (1023bp) protein (341aa)
Stage V sporulation protein AD n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDX1_9FIRM
Stage V sporulation protein AD {ECO:0000313|EMBL:EGJ47017.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
spoVAD; stage V sporulation protein AD
L3_106_000M1_scaffold_3966_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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8687..9043
DNA (357bp) protein (119aa)
Stage V sporulation protein AE n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDX0_9FIRM
Stage V sporulation protein AE {ECO:0000313|EMBL:EGJ47016.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
stage V sporulation protein AE
L3_106_000M1_scaffold_3966_12
unknown

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comp(9260..9430)
DNA (171bp) protein (57aa)

This feature has no annotations

L3_106_000M1_scaffold_3966_13
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9642..9998
DNA (357bp) protein (119aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CCD3_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFE12879.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Helix-turn-helix.
L3_106_000M1_scaffold_3966_14
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10014..10382
DNA (369bp) protein (123aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CCD3_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFE12879.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
DNA-binding protein
L3_106_000M1_scaffold_3966_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10559..11200
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RUS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQN60307.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized BCR, YitT family COG1284.
L3_106_000M1_scaffold_3966_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11367..12296)
DNA (930bp) protein (310aa)
cysK; O-acetylserine sulfhydrylase CysK (EC:2.5.1.47)
Cysteine synthase A n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAI8_9FIRM
Cysteine synthase A {ECO:0000313|EMBL:EGJ47366.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_3966_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12463..13314
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAI9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47367.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_3966_18
unknown

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comp(13301..13483)
DNA (183bp) protein (61aa)

This feature has no annotations

L3_106_000M1_scaffold_3966_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13585..14004
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47368.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_3966_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14058..14246)
DNA (189bp) protein (63aa)
50S ribosomal protein L28 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCF2_9FIRM
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpmB; 50S ribosomal protein L28
L3_106_000M1_scaffold_3966_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14474..15424
DNA (951bp) protein (317aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hprK; HPr kinase/phosphorylase (EC:2.7.11.- 2.7.4.-)
HPr kinase/phosphorylase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCF1_9FIRM
L3_106_000M1_scaffold_3966_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15427..16374
DNA (948bp) protein (316aa)
glucokinase (EC:2.7.1.2)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48261.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Displaying 22 items

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