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L3_106_000M1_scaffold_5078

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_5078_1
unknown

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411..707
DNA (297bp) protein (99aa)

This feature has no annotations

L3_106_000M1_scaffold_5078_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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939..2333
DNA (1395bp) protein (465aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
tRNA modification GTPase MnmE n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGT6_9FIRM
mnmE; tRNA modification GTPase MnmE
L3_106_000M1_scaffold_5078_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2400..3326
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45576.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative DNA-binding protein
L3_106_000M1_scaffold_5078_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3400..4443)
DNA (1044bp) protein (348aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG18_9FIRM
sensor protein
L3_106_000M1_scaffold_5078_5
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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4916..5926
DNA (1011bp) protein (337aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NX83_9FIRM
glyceraldehyde 3-phosphate dehydrogenase
L3_106_000M1_scaffold_5078_6
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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6134..6463
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YGX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14461.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
transcriptional regulator
L3_106_000M1_scaffold_5078_7
unknown

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comp(7168..7269)
DNA (102bp) protein (34aa)

This feature has no annotations

L3_106_000M1_scaffold_5078_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7397..7687
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45627.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_5078_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7839..9170
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCU8_9FIRM
L3_106_000M1_scaffold_5078_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9167..10003
DNA (837bp) protein (279aa)
Two-component system, response regulator YcbB n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCU9_9FIRM
Two-component system, response regulator YcbB {ECO:0000313|EMBL:EGJ46645.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
FOG: CheY-like receiver
L3_106_000M1_scaffold_5078_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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10605..11807
DNA (1203bp) protein (401aa)
Sodium/glutamate symporter n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCV0_9FIRM
Sodium/glutamate symporter {ECO:0000313|EMBL:EGJ46646.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
sodium--glutamate symport carrier (gltS)
Displaying 11 items

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