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L3_106_000M1_scaffold_249

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_249_1
Treponema azotonutricium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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300..1499
DNA (1200bp) protein (400aa)
NADH-dependent butanol dehydrogenase A (EC:1.1.1.-)
NADH-dependent butanol dehydrogenase A {ECO:0000313|EMBL:AEF80108.1}; EC=1.1.1.- {ECO:0000313|EMBL:AEF80108.1};; TaxID=545695 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9).;"
NADH-dependent butanol dehydrogenase A n=1 Tax=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) RepID=F5YFC3_TREAZ
L3_106_000M1_scaffold_249_2
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1678..1839
DNA (162bp) protein (54aa)
50S ribosomal protein L33 n=2 Tax=environmental samples RepID=R5Y6E2_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
LSU ribosomal protein L33P
L3_106_000M1_scaffold_249_3
Mycobacterium triplex, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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1876..2142
DNA (267bp) protein (89aa)
Protein translocase subunit SecE n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WDB4_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=47839 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium triplex.;"
secE; preprotein translocase subunit SecE
L3_106_000M1_scaffold_249_4
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2156..2734
DNA (579bp) protein (193aa)
transcription antitermination protein nusG
Transcription antitermination protein nusG id=2183334 bin=GWB2_Clostridiales_37_7 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_106_000M1_scaffold_249_5
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2829..3254
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AHH9_9CLOT
50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
L3_106_000M1_scaffold_249_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3308..3997
DNA (690bp) protein (230aa)
50S ribosomal protein L1 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BAC1_9CLOT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ribosomal protein L1, bacterial/chloroplast
L3_106_000M1_scaffold_249_7
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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4218..4745
DNA (528bp) protein (176aa)
50S ribosomal protein L10 n=1 Tax=Thermincola potens (strain JR) RepID=D5X9V1_THEPJ
50S ribosomal protein L10
Tax=BJP_IG2158_Thermincola_46_17
L3_106_000M1_scaffold_249_8
Selenomonas artemidis, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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4795..5172
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=3 Tax=Selenomonas RepID=E4LMD7_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=749551 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas artemidis F0399.;"
50S ribosomal protein L7/L12
L3_106_000M1_scaffold_249_9
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5213..6007)
DNA (795bp) protein (265aa)
alpha/beta hydrolase n=1 Tax=Desulfitobacterium hafniense RepID=UPI00037443DB
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE85424.1}; TaxID=138119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain Y51).;"
L3_106_000M1_scaffold_249_10
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6004..6633)
DNA (630bp) protein (210aa)
Uncharacterized protein n=2 Tax=Listeria monocytogenes RepID=D2P2Z5_LISM1
hypothetical protein
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EHL05914.1}; TaxID=537010 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense DP7.;"
L3_106_000M1_scaffold_249_11
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6581..7963)
DNA (1383bp) protein (461aa)
MATE efflux family protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GE33_EUBLK
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:ADO37528.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_106_000M1_scaffold_249_12
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8156..9736)
DNA (1581bp) protein (527aa)
Amidohydrolase family protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F0T5_CLOS4
Amidohydrolase family protein {ECO:0000313|EMBL:ERI98886.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
amidohydrolase
L3_106_000M1_scaffold_249_13
unknown

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comp(9733..9858)
DNA (126bp) protein (42aa)

This feature has no annotations

L3_106_000M1_scaffold_249_14
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9858..10907)
DNA (1050bp) protein (350aa)
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Desulfitobacterium hafniense RepID=UPI0003635C9C
ABC transporter substrate-binding protein
Tax=BJP_IG2157_Clostridiales_52_13
L3_106_000M1_scaffold_249_15
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10904..11701)
DNA (798bp) protein (266aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Clostridium termitidis CT1112 RepID=S0FKV4_9CLOT
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EMS70941.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
binding-protein-dependent transport system inner membrane protein
L3_106_000M1_scaffold_249_16
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11698..12525)
DNA (828bp) protein (276aa)
Binding--dependent transport system inner membrane component family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VUT7_CLOBI
ABC transporter permease {ECO:0000313|EMBL:KGJ48176.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
binding-protein-dependent transport system inner membrane protein
L3_106_000M1_scaffold_249_17
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12522..13625)
DNA (1104bp) protein (368aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
Spermidine/putrescine ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5Q1T5_9FIRM
spermidine/putrescine ABC transporter ATP-binding subunit
L3_106_000M1_scaffold_249_18
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13651..14190)
DNA (540bp) protein (180aa)
Transcriptional regulator, XRE family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KLF4_CLOPH
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABX41283.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_106_000M1_scaffold_249_19
unknown

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14417..15403
DNA (987bp) protein (329aa)

This feature has no annotations

L3_106_000M1_scaffold_249_20
Bacillus akibai, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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15502..16617
DNA (1116bp) protein (372aa)
aminopeptidase n=1 Tax=Bacillus sp. L1(2012) RepID=UPI00034D819E
Aminopeptidase {ECO:0000313|EMBL:GAE34178.1}; TaxID=1236973 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus akibai (strain ATCC 43226 / DSM 21942 / JCM 9157 / 1139).;"
Aminopeptidase
L3_106_000M1_scaffold_249_21
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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16635..17744
DNA (1110bp) protein (370aa)
pepS; aminopeptidase PepS (EC:3.4.11.-)
aminopeptidase n=1 Tax=Brevibacillus sp. phR RepID=UPI0002DF734C
Thermophilic metalloprotease family protein {ECO:0000313|EMBL:CCF14654.1}; TaxID=1118154 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus GI-9.;"
L3_106_000M1_scaffold_249_22
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17870..18880
DNA (1011bp) protein (337aa)
gap; Gap (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
Gap n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VQV2_CLOSH
L3_106_000M1_scaffold_249_23
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19078..20121)
DNA (1044bp) protein (348aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU000439}; EC=1.1.1.94 {ECO:0000256|RuleBase:RU000439};; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Glycerol-3-phosphate dehydrogenase n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G0G8_9FIRM
hypothetical protein
L3_106_000M1_scaffold_249_24
Paenibacillus sp. FSL R5-808, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20327..21412
DNA (1086bp) protein (362aa)
sucrose-6-phosphate hydrolase (EC:3.2.1.26)
Glycosyl hydrolases family 32 protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y6I8_9FIRM
Sucrose-6-phosphate hydrolase {ECO:0000313|EMBL:ETT34901.1}; TaxID=1227076 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-808.;"
L3_106_000M1_scaffold_249_25
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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21513..22373
DNA (861bp) protein (287aa)
Oxidoreductase, aldo/keto reductase family protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MGT0_9FIRM
Oxidoreductase aldo/keto reductase family protein {ECO:0000313|EMBL:CDC35394.1}; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
oxidoreductase
L3_106_000M1_scaffold_249_26
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22412..25066)
DNA (2655bp) protein (885aa)
Calcium-translocating P-type ATPase, PMCA-type n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M1C6_9FIRM
Calcium-translocating P-type ATPase, PMCA-type {ECO:0000313|EMBL:EOS64770.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
ATPase P
L3_106_000M1_scaffold_249_27
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25440..28145)
DNA (2706bp) protein (902aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6EM91_9FIRM
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:CDA91107.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
peptidase S8/S53 subtilisin kexin sedolisin
L3_106_000M1_scaffold_249_28
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(28262..28885)
DNA (624bp) protein (208aa)
Multimeric flavodoxin WrbA n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D8W7_9FIRM
Multimeric flavodoxin WrbA {ECO:0000313|EMBL:CCX73282.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Multimeric flavodoxin WrbA
L3_106_000M1_scaffold_249_29
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29019..30188)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RX34_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38962.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Uncharacterized flavoproteins
L3_106_000M1_scaffold_249_30
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30423..30884
DNA (462bp) protein (154aa)
Transcriptional regulator, MarR family n=2 Tax=Clostridium RepID=D3AMH1_9CLOT
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EFC96986.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
MarR family transcriptional regulator
Displaying items 1-30 of 108 in total

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