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L3_106_000M1_scaffold_275

Search features with annotation key words

Displaying items 1-30 of 114 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_275_1
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(499..1320)
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FF91_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF04942.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
amidohydrolase 2
L3_106_000M1_scaffold_275_2
unknown

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comp(1322..1945)
DNA (624bp) protein (208aa)

This feature has no annotations

L3_106_000M1_scaffold_275_3
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1951..2583)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NNZ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ05503.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
L3_106_000M1_scaffold_275_4
unknown

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comp(2691..3200)
DNA (510bp) protein (170aa)

This feature has no annotations

L3_106_000M1_scaffold_275_5
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3204..4199)
DNA (996bp) protein (332aa)
UPF0365 protein Cthe_0858 n=1 Tax=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) RepID=Y858_CLOTH
hypothetical protein
UPF0365 protein Cthe_0858 {ECO:0000255|HAMAP-Rule:MF_01562}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_106_000M1_scaffold_275_6
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4220..4702)
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1T8K4_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGD49802.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
protein of unknown function DUF107
L3_106_000M1_scaffold_275_7
Morganella morganii, Morganella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4787..5236)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Morganella morganii subsp. morganii KT RepID=J7TRQ0_MORMO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG30539.1}; TaxID=1124991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Morganella.;" source="Morganella morganii subsp. morganii KT.;"
L3_106_000M1_scaffold_275_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5343..6758)
DNA (1416bp) protein (472aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Glucose-6-phosphate isomerase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BD91_9CLOT
glucose-6-phosphate isomerase
L3_106_000M1_scaffold_275_9
Thermoanaerobacterium aotearoense, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(6831..7634)
DNA (804bp) protein (268aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VV56_THESW
xylose isomerase domain-containing protein
Xylose isomerase domain-containing protein {ECO:0000313|EMBL:ETO38497.1}; TaxID=1421016 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium aotearoense SCUT27.;"
L3_106_000M1_scaffold_275_10
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7631..8137)
DNA (507bp) protein (169aa)
Putative cob(I)yrinic acid a,c-diamide adenosyltransferase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CU93_9CLOT
Putative cob(I)yrinic acid a,c-diamide adenosyltransferase {ECO:0000313|EMBL:EEG57356.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
cobalamin adenosyltransferase
L3_106_000M1_scaffold_275_11
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8296..9534
DNA (1239bp) protein (413aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Clostridium termitidis CT1112 RepID=S0FJG7_9CLOT
L3_106_000M1_scaffold_275_12
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9538..9774
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VU62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO60512.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_106_000M1_scaffold_275_13
Bacillus coagulans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(9804..10850)
DNA (1047bp) protein (349aa)
A/G-specific adenine glycosylase n=1 Tax=Bacillus coagulans 36D1 RepID=G2TKC9_BACCO
Bacillus coagulans strain HM-08, complete genome {ECO:0000313|EMBL:AJO21751.1}; TaxID=1398 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus coagulans.;"
A/G-specific adenine glycosylase
L3_106_000M1_scaffold_275_14
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10847..11740)
DNA (894bp) protein (298aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Homoserine kinase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JKT5_CELLD
homoserine kinase
L3_106_000M1_scaffold_275_15
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11854..13932)
DNA (2079bp) protein (693aa)
Elongation factor G 1 n=1 Tax=Clostridium sp. CAG:138 RepID=R6AIX7_9CLOT
Elongation factor G 1 {ECO:0000313|EMBL:CDA51938.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
translation elongation factor 2 (EF-2/EF-G)
L3_106_000M1_scaffold_275_16
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14302..15081)
DNA (780bp) protein (260aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7ICE7_9FIRM
L3_106_000M1_scaffold_275_17
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15118..16152)
DNA (1035bp) protein (345aa)
Stage II sporulation protein P n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AN35_9CLOT
Stage II sporulation protein P {ECO:0000313|EMBL:CCX42192.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
stage II sporulation protein P
L3_106_000M1_scaffold_275_18
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16199..17005)
DNA (807bp) protein (269aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
Germination protease n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TAD6_9CLOT
GPR endopeptidase
L3_106_000M1_scaffold_275_19

Not on your lists


17180..17443
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I6P1_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1489285 species="Bacteria; environmental samples.;" source="uncultured bacterium Ad_125_D08.;"
30S ribosomal protein S20
L3_106_000M1_scaffold_275_20
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17490..18503)
DNA (1014bp) protein (338aa)
DNA polymerase III n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIX3_9FIRM
DNA polymerase III {ECO:0000313|EMBL:CDE51719.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
DNA polymerase III subunit delta
L3_106_000M1_scaffold_275_21
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18528..20054)
DNA (1527bp) protein (509aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Clostridium sp. CAG:138 RepID=R6ATH2_9CLOT
competence related membrane protein
Tax=BJP_IG2157_Clostridiales_52_13
L3_106_000M1_scaffold_275_22
Geobacillus sp. Y4.1MC1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20079..20792)
DNA (714bp) protein (238aa)
Beta-lactamase domain protein n=3 Tax=Geobacillus RepID=E3IDS2_GEOS0
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ADP75819.1}; TaxID=581103 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain Y4.1MC1).;"
L3_106_000M1_scaffold_275_23
unknown

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comp(20805..21317)
DNA (513bp) protein (171aa)

This feature has no annotations

L3_106_000M1_scaffold_275_24
bacterium UASB270, Bacteria

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comp(21353..21682)
DNA (330bp) protein (110aa)
stress responsive alpha-beta barrel domain-containing protein
Stress responsive alpha-beta barrel domain protein {ECO:0000313|EMBL:GAK61681.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
L3_106_000M1_scaffold_275_25
unknown

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comp(21679..21972)
DNA (294bp) protein (98aa)

This feature has no annotations

L3_106_000M1_scaffold_275_26
CG_OP9-01, Atribacteria, Bacteria

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comp(21969..22556)
DNA (588bp) protein (196aa)
Metal-dependent phosphohydrolase, HDc domain-containing, putative n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AML1_GEOSK
metal-dependent phosphohydrolase, HDc domain-containing
Tax=CG_OP9-01
L3_106_000M1_scaffold_275_27
unknown

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22833..23180
DNA (348bp) protein (116aa)

This feature has no annotations

L3_106_000M1_scaffold_275_28
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23268..24251
DNA (984bp) protein (328aa)
Sugar kinases, ribokinase family id=4043277 bin=GWC2_Clostridiales_40_7 species=Ruminococcus bromii genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
Putative kinase {ECO:0000313|EMBL:EMS70483.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
putative sugar kinase
L3_106_000M1_scaffold_275_29
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24382..24942
DNA (561bp) protein (187aa)
BioY family protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QKH1_9CLOT
BioY family protein {ECO:0000313|EMBL:EKY28463.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
BioY family protein
L3_106_000M1_scaffold_275_30
unknown

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24989..25102
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying items 1-30 of 114 in total

View Taxonomy