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L3_106_000M1_scaffold_1668

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1668_1
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

2..697
DNA (696bp) protein (232aa)
Arginine biosynthesis bifunctional protein ArgJ id=4148224 bin=GWF2_Lentisphaerae_50_93 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase
Tax=GWF2_Lentisphaerae_50_93_curated
L3_106_000M1_scaffold_1668_2
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

715..1521
DNA (807bp) protein (269aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase I, putative id=3476315 bin=GWF2_Lentisphaerae_49_21 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1668_3
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(1598..2428)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6S0L8_9CLOT
AraC family transcriptional regulator
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1668_4
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(3159..5267)
DNA (2109bp) protein (703aa)
hypothetical protein n=1 Tax=WS1 bacterium JGI 0000059-K21 RepID=UPI00036F7615
hypothetical protein
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1668_5
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(5291..8605)
DNA (3315bp) protein (1105aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1J0I7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94074.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
L3_106_000M1_scaffold_1668_6
GWF2_Lentisphaerae_45_14_curated, Lentisphaerae, Bacteria

Not on your lists

comp(8590..9393)
DNA (804bp) protein (268aa)
Putative uncharacterized protein id=3921261 bin=GWF2_Lentisphaerae_50_93 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
prepilin-type N-terminal cleavage/methylation domain
Tax=GWF2_Lentisphaerae_45_14_curated
L3_106_000M1_scaffold_1668_7
GWF1_Spirochaetes_41_5_curated, Spirochaetes, Bacteria

Not on your lists

comp(9422..10411)
DNA (990bp) protein (330aa)
Transcriptional regulator, lacI family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKZ4_9BACT
LacI family transcriptional regulator
Tax=GWF1_Spirochaetes_41_5_curated
L3_106_000M1_scaffold_1668_8
unknown

Not on your lists

comp(10793..11680)
DNA (888bp) protein (296aa)

This feature has no annotations

L3_106_000M1_scaffold_1668_9
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11677..13197)
DNA (1521bp) protein (507aa)
Alpha amylase catalytic region n=1 Tax=Clostridium sp. CAG:448 RepID=R6SHF9_9CLOT
Alpha amylase catalytic region {ECO:0000313|EMBL:CDC60583.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
L3_106_000M1_scaffold_1668_10
GWF2_Lentisphaerae_45_14_curated, Lentisphaerae, Bacteria

Not on your lists

comp(13212..13916)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJ22_9BACT
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=GWF2_Lentisphaerae_45_14_curated
L3_106_000M1_scaffold_1668_11
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13949..14965)
DNA (1017bp) protein (339aa)
AraR n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VPK8_CLOSH
GntR family transcriptional regulator with LacI sensor
GntR family transcriptional regulator with LacI sensor {ECO:0000313|EMBL:CDZ23758.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_106_000M1_scaffold_1668_12
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15307..16665)
DNA (1359bp) protein (453aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JPK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN36130.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
putative efflux protein, MATE family
L3_106_000M1_scaffold_1668_13
Treponema caldarium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

17585..18745
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8EYA7_SPICH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ18266.1}; TaxID=744872 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) (Spirochaeta; caldaria).;"
L3_106_000M1_scaffold_1668_14
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(18842..19642)
DNA (801bp) protein (267aa)
Putative uncharacterized protein id=3466910 bin=GWF2_Planctomycetes_50_10 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
hypothetical protein
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1668_15
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(19642..20073)
DNA (432bp) protein (144aa)
Putative uncharacterized protein id=3799155 bin=GWF2_Lentisphaerae_49_21 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1668_16
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

20139..20420
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Desulfovibrio sp. Dsv1 RepID=UPI00039A72AC
hypothetical protein
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1668_17
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

20422..20631
DNA (210bp) protein (70aa)
antitoxin n=1 Tax=Desulfovibrio sp. Dsv1 RepID=UPI00039ACB43
hypothetical protein
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1668_18
GWF2_Planctomycetes_50_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(20638..21912)
DNA (1275bp) protein (425aa)
DNA polymerase III subunit beta id=3466914 bin=GWF2_Planctomycetes_50_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
Tax=GWF2_Planctomycetes_50_10_curated
L3_106_000M1_scaffold_1668_19
unknown

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21925..22047
DNA (123bp) protein (41aa)

This feature has no annotations

L3_106_000M1_scaffold_1668_20
RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22082..22777)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZH1_GEODF
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated
L3_106_000M1_scaffold_1668_21
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

comp(22774..25971)
DNA (3198bp) protein (1066aa)
Type I site-specific deoxyribonuclease, HsdR family id=2647943 bin=GWF2_Lentisphaerae_57_35 species=Chlorobium phaeobacteroides genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
HsdR family type I site-specific deoxyribonuclease
Tax=GWF2_Lentisphaerae_57_35_curated
L3_106_000M1_scaffold_1668_22
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25974..26939)
DNA (966bp) protein (322aa)
Filamentation induced by cAMP protein Fic id=2270521 bin=GWB2_Geobacter-like_52_12 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
filamentation induced by cAMP protein Fic
Tax=GWB2_Geobacteraceae_52_12_curated
L3_106_000M1_scaffold_1668_23
Porphyromonas sp. oral taxon 279, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27048..28283)
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Myroides injenensis RepID=UPI000289D543
hypothetical protein
PF12686 family protein {ECO:0000313|EMBL:EJU17495.1}; TaxID=1125723 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. oral taxon 279 str. F0450.;"
L3_106_000M1_scaffold_1668_24
Mannheimia varigena, Mannheimia, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28290..29414)
DNA (1125bp) protein (375aa)
Type I restriction modification DNA specificity domain protein n=2 Tax=Haemophilus parasuis RepID=U4S704_HAEPR
Restriction endonuclease S subunit
Restriction endonuclease S subunit {ECO:0000313|EMBL:AHG75578.1}; TaxID=1433287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia.;" source="Mannheimia varigena USDA-ARS-USMARC-1296.;"
L3_106_000M1_scaffold_1668_25
Smithella sp. SCADC, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29411..30982)
DNA (1572bp) protein (524aa)
Type I restriction-modification system, M subunit n=1 Tax=Chlorobium phaeobacteroides (strain BS1) RepID=B3EQE6_CHLPB
Type I restriction-modification protein subunit M {ECO:0000313|EMBL:KFO67434.1}; TaxID=1499107 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. SCADC.;"
type I restriction-modification system, M subunit
L3_106_000M1_scaffold_1668_26
unknown

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comp(30985..31161)
DNA (177bp) protein (59aa)

This feature has no annotations

L3_106_000M1_scaffold_1668_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31781..32854)
DNA (1074bp) protein (358aa)
Virulence RhuM family protein n=1 Tax=Clostridium difficile P28 RepID=T4P311_CLODI
Virulence RhuM family protein {ECO:0000313|EMBL:EQJ61841.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_106_000M1_scaffold_1668_28
Akkermansia muciniphila CAG:154, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(32903..33829)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Akkermansia muciniphila CAG:154 RepID=R6IY58_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDB55288.1}; TaxID=1263034 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia muciniphila CAG:154.;"
hypothetical protein
L3_106_000M1_scaffold_1668_29
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

comp(33899..34084)
DNA (186bp) protein (62aa)
Helix-turn-helix domain protein n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W0U5_DESIS
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADU66440.1}; TaxID=653733 species="Bacteria; Chrysiogenetes; Chrysiogenales; Chrysiogenaceae; Desulfurispirillum.;" source="Desulfurispirillum indicum (strain ATCC BAA-1389 / S5).;"
L3_106_000M1_scaffold_1668_30
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

34419..35798
DNA (1380bp) protein (460aa)
helicase n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B77C1F
putative helicase
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Displaying 30 items

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