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L3_106_000M1_scaffold_1942

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1942_1
Sulfurimonas gotlandica, Sulfurimonas, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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1..291
DNA (291bp) protein (97aa)
Glycosyl transferase, family 2 {ECO:0000313|EMBL:EHP29018.1}; EC=2.4.1.- {ECO:0000313|EMBL:EHP29018.1};; TaxID=929558 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfurimonas.;" source="Sulfurimonas gotlandica (strain DSM 19862 / JCM 16533 / GD1).;"
Glycosyl transferase, family 2 n=1 Tax=Sulfurimonas gotlandica GD1 RepID=B6BKG3_9HELI
family 2 glycosyl transferase
L3_106_000M1_scaffold_1942_2
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

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368..682
DNA (315bp) protein (105aa)
50S ribosomal protein L21
50S ribosomal protein L21 id=4821674 bin=GWA2_OP3_52_12 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1942_3
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

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702..1598
DNA (897bp) protein (299aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase id=4476117 bin=GWF2_Lentisphaerae_49_21 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase
Tax=GWF2_Lentisphaerae_52_8_curated
L3_106_000M1_scaffold_1942_4
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

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1668..2426
DNA (759bp) protein (253aa)
Hypothetical conserved protein id=3810387 bin=GWF2_Planctomycetes_42_9 species=Oceanobacillus iheyensis genus=Oceanobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1942_5
Bacteroides sp. CAG:770, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2444..3478
DNA (1035bp) protein (345aa)
beta-glucanase n=1 Tax=Alistipes senegalensis RepID=UPI0002F22474
Uncharacterized protein {ECO:0000313|EMBL:CDC64956.1}; TaxID=1262751 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:770.;"
beta-glucanase precursor
L3_106_000M1_scaffold_1942_6
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

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comp(3505..4323)
DNA (819bp) protein (273aa)
Putative uncharacterized protein id=4421172 bin=GWF2_Lentisphaerae_50_93 species=Bacteroides cellulosilyticus genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
AraC family transcriptional regulator
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1942_7
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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4433..5311
DNA (879bp) protein (293aa)
id=4421171 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Tax=GWF2_Lentisphaerae_50_93_curated
L3_106_000M1_scaffold_1942_8
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

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5329..6570
DNA (1242bp) protein (414aa)
Putative dehydrogenase id=4672931 bin=GWF2_Lentisphaerae_52_8 species=Arthrobacter phenanthrenivorans genus=Arthrobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
Predicted dehydrogenases and related proteins
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_1942_9
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6680..7042
DNA (363bp) protein (121aa)
Transcriptional repressor smtB homolog n=1 Tax=Clostridium ultunense Esp RepID=M1Z4A5_9CLOT
Transcriptional repressor smtB homolog {ECO:0000313|EMBL:CCQ92353.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
ArsR family transcriptional regulator
L3_106_000M1_scaffold_1942_10
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7039..9153
DNA (2115bp) protein (705aa)
Heavy metal translocating P-type ATPase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGT9_ALKOO
heavy metal translocating P-type ATPase
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ABW18633.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
L3_106_000M1_scaffold_1942_11
unknown

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9592..10668
DNA (1077bp) protein (359aa)

This feature has no annotations

L3_106_000M1_scaffold_1942_12
unknown

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10945..11250
DNA (306bp) protein (102aa)

This feature has no annotations

L3_106_000M1_scaffold_1942_13
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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11270..13489
DNA (2220bp) protein (740aa)
Bifunctional DNA primase/polymerase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RCN8_AMMDK
bifunctional DNA primase/polymerase
Bifunctional DNA primase/polymerase {ECO:0000313|EMBL:ACX52015.1}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
L3_106_000M1_scaffold_1942_14
unknown

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13640..13735
DNA (96bp) protein (32aa)

This feature has no annotations

L3_106_000M1_scaffold_1942_15
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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14443..14892
DNA (450bp) protein (150aa)
Nuclease (SNase domain-containing protein) n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q30XJ4_DESDG
nuclease
Nuclease (SNase domain-containing protein) {ECO:0000313|EMBL:ABB39602.1}; Flags: Precursor;; TaxID=207559 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans; (strain G20)).;"
L3_106_000M1_scaffold_1942_16
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14912..15934
DNA (1023bp) protein (341aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Prevotella sp. CAG:873 RepID=R7IZZ4_9BACT
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
L3_106_000M1_scaffold_1942_17
unknown

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15950..16246
DNA (297bp) protein (99aa)

This feature has no annotations

L3_106_000M1_scaffold_1942_18
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16473..17753
DNA (1281bp) protein (427aa)
LIM zinc-binding protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI00031069C6
LIM zinc-binding protein
LIM zinc-binding protein {ECO:0000313|EMBL:ADU21647.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_106_000M1_scaffold_1942_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17744..18442
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B571_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50448.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_106_000M1_scaffold_1942_20
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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18439..19353
DNA (915bp) protein (305aa)
Possible integrase id=2908152 bin=GWF2_Lentisphaerae_50_93 species=Sphingobacterium spiritivorum genus=Sphingobacterium taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
phage integrase
Tax=GWF2_Lentisphaerae_50_93_curated
L3_106_000M1_scaffold_1942_21
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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19408..20433
DNA (1026bp) protein (342aa)
ruvB; crossover junction endoribonuclease subunit B (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB id=2908150 bin=GWF2_Lentisphaerae_50_93 species=Mobiluncus curtisii genus=Mobiluncus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Tax=GWF2_Lentisphaerae_50_93_curated
L3_106_000M1_scaffold_1942_22
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20561..21124
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AC30_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD58348.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_106_000M1_scaffold_1942_23
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21177..21914)
DNA (738bp) protein (246aa)
type II restriction endonuclease PaeR7I n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000374D952
restriction endonuclease PaeR7I
Restriction endonuclease PaeR7I {ECO:0000313|EMBL:AJF06830.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
L3_106_000M1_scaffold_1942_24
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21918..23597)
DNA (1680bp) protein (560aa)
Putative type II DNA modification methylase n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PCC21 RepID=J7KWA4_PECCC
modification methylase PaeR7I
Modification methylase PaeR7I {ECO:0000313|EMBL:AJF08001.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
L3_106_000M1_scaffold_1942_25
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

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comp(23865..25307)
DNA (1443bp) protein (481aa)
Integrase/recombinase XerD id=3589788 bin=GWF2_Lentisphaerae_38_69 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
integrase
Tax=GWF2_Lentisphaerae_38_69_curated
L3_106_000M1_scaffold_1942_26
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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26082..28034
DNA (1953bp) protein (651aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN41562.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_106_000M1_scaffold_1942_27
GWF2_Lentisphaerae_45_14_curated, Lentisphaerae, Bacteria

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comp(28167..29147)
DNA (981bp) protein (327aa)
LacI family transcriptional regulator n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0J6V3_9PSED
transcriptional regulator
Tax=GWF2_Lentisphaerae_45_14_curated
L3_106_000M1_scaffold_1942_28
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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29298..30515
DNA (1218bp) protein (406aa)
id=4421243 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Tax=GWF2_Lentisphaerae_50_93_curated
L3_106_000M1_scaffold_1942_29
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(30498..30992)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U2B263_9PSED
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
L3_106_000M1_scaffold_1942_30
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(30986..31690)
DNA (705bp) protein (235aa)
Cobalamin synthase n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DJM7_9FIRM
cobS; cobalamin-5'-phosphate synthase
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
Displaying 30 items

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