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L3_106_000M1_scaffold_3390

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_3390_1
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

2..763
DNA (762bp) protein (254aa)
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
L3_106_000M1_scaffold_3390_2
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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776..1030
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YWY6_METPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI60958.1}; TaxID=304371 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /; SANAE).;"
L3_106_000M1_scaffold_3390_3
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists


comp(1131..1625)
DNA (495bp) protein (165aa)
50S ribosomal protein L17 id=3476669 bin=GWF2_Lentisphaerae_49_21 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
50S ribosomal protein L17
Tax=GWF2_Lentisphaerae_49_21_curated
L3_106_000M1_scaffold_3390_4
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(1685..2701)
DNA (1017bp) protein (339aa)
DNA-directed RNA polymerase subunit alpha id=4066961 bin=GWF2_Lentisphaerae_52_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
DNA-directed RNA polymerase subunit alpha
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_3390_5
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

Not on your lists


comp(2861..3307)
DNA (447bp) protein (149aa)
30S ribosomal protein S11 id=4066964 bin=GWF2_Lentisphaerae_52_8 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
rpsK; 30S ribosomal protein S11
Tax=GWF2_Lentisphaerae_52_8_curated
L3_106_000M1_scaffold_3390_6
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

Not on your lists


comp(3410..3808)
DNA (399bp) protein (133aa)
30S ribosomal protein S13 id=3795596 bin=GWF2_Lentisphaerae_38_69 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
rpsM; 30S ribosomal protein S13
Tax=GWF2_Lentisphaerae_38_69_curated
L3_106_000M1_scaffold_3390_7
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

Not on your lists

comp(3850..3966)
DNA (117bp) protein (39aa)
50S ribosomal protein L36 n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y6C0_9BACT
rpmJ; 50S ribosomal protein L36
Tax=GWF2_Lentisphaerae_38_69_curated
L3_106_000M1_scaffold_3390_8
unknown

Not on your lists

comp(4056..4427)
DNA (372bp) protein (124aa)

This feature has no annotations

L3_106_000M1_scaffold_3390_9
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

4494..5942
DNA (1449bp) protein (483aa)
Amidophosphoribosyltransferase id=3333279 bin=GWF2_Lentisphaerae_57_35 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
glutamine phosphoribosylpyrophosphate amidotransferase
Tax=GWF2_Lentisphaerae_57_35_curated
L3_106_000M1_scaffold_3390_10
GWF2_Lentisphaerae_45_14_curated, Lentisphaerae, Bacteria

Not on your lists

5958..6791
DNA (834bp) protein (278aa)
speE2; spermidine synthase SpeE2 (EC:2.5.1.16)
spermidine synthase n=1 Tax=Desulfobacter curvatus RepID=UPI00037F5C54
Tax=GWF2_Lentisphaerae_45_14_curated
L3_106_000M1_scaffold_3390_11
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(7039..8340)
DNA (1302bp) protein (434aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EQ75_CORAD
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ADE53843.1}; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
L3_106_000M1_scaffold_3390_12
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

Not on your lists

comp(8333..8818)
DNA (486bp) protein (162aa)
Aspartate kinase, monofunctional class n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQX6_9BACT
Aspartate kinase, monofunctional class {ECO:0000313|EMBL:EDM26026.1}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
tripartite AtP-independent periplasmic transporter subunit DctQ
L3_106_000M1_scaffold_3390_13
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(8818..9837)
DNA (1020bp) protein (340aa)
Trap-type c4-dicarboxylate transport system, periplasmic component n=1 Tax=Rhodopirellula sallentina SM41 RepID=M5UR53_9PLAN
Trap-type c4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:EMI58473.1}; TaxID=1263870 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
TRAP dicarboxylate transporter, DctP subunit
L3_106_000M1_scaffold_3390_14
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(10036..11745)
DNA (1710bp) protein (570aa)
Single-stranded-DNA-specific exonuclease RecJ id=4148159 bin=GWF2_Lentisphaerae_50_93 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
single-stranded-DNA-specific exonuclease RecJ
Tax=GWF2_Lentisphaerae_44_16_curated
L3_106_000M1_scaffold_3390_15
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12402..14261
DNA (1860bp) protein (620aa)
Integrase family protein n=1 Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=I7FID9_GEOSL
integrase family protein
Integrase family protein {ECO:0000313|EMBL:AFP20438.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
L3_106_000M1_scaffold_3390_16
unknown

Not on your lists

14473..14745
DNA (273bp) protein (91aa)

This feature has no annotations

L3_106_000M1_scaffold_3390_17
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14738..16174
DNA (1437bp) protein (479aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YCX9_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX28423.1}; TaxID=201089 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
hypothetical protein
L3_106_000M1_scaffold_3390_18
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16701..17105
DNA (405bp) protein (135aa)
Nuclease (SNase domain-containing protein) n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q30XJ4_DESDG
nuclease
Nuclease (SNase domain-containing protein) {ECO:0000313|EMBL:ABB39602.1}; Flags: Precursor;; TaxID=207559 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans; (strain G20)).;"
L3_106_000M1_scaffold_3390_19
unknown

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17387..17710
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. SirexAA-E RepID=G2NL59_9ACTO
hypothetical protein
L3_106_000M1_scaffold_3390_20
unknown

Not on your lists

17740..18408
DNA (669bp) protein (223aa)

This feature has no annotations

L3_106_000M1_scaffold_3390_21
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

18405..18896
DNA (492bp) protein (164aa)
id=2908166 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Tax=GWF2_Lentisphaerae_50_93_curated
Displaying 21 items

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