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L3_106_000M1_scaffold_2332

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2332_1
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2..571)
DNA (570bp) protein (190aa)
Type I restriction modification DNA specificity domain protein n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PH01_9BACE
Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:EGF53016.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
hsdS_1a; Type I restriction enzyme specificity subunit
L3_106_000M1_scaffold_2332_2
Bacteroides sp. 1_1_30, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(583..1365)
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 1_1_30 RepID=F7M8W0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGM98314.1}; TaxID=457387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_30.;"
hypothetical protein
L3_106_000M1_scaffold_2332_3
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1367..2542)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=F3PH03_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGF53018.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
hypothetical protein
L3_106_000M1_scaffold_2332_4
Bacteroides sp. 1_1_30, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2526..4208)
DNA (1683bp) protein (561aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 1_1_30 RepID=F7M8W2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGM98316.1}; TaxID=457387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_30.;"
putative modification protein of type I restriction-modification system
L3_106_000M1_scaffold_2332_5
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4212..7382)
DNA (3171bp) protein (1057aa)
type I site-specific deoxyribonuclease, HsdR family (EC:3.1.21.3)
Type I site-specific deoxyribonuclease, HsdR family n=2 Tax=Bacteroides RepID=F3PH05_9BACE
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EGF53020.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
L3_106_000M1_scaffold_2332_6
Bacteroides sp. 1_1_30, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7394..7618)
DNA (225bp) protein (75aa)
DNA-binding helix-turn-helix protein n=3 Tax=Bacteroidales RepID=F3PH06_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGM98318.1}; TaxID=457387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_30.;"
helix-turn-helix domain-containing protein
L3_106_000M1_scaffold_2332_7
Bacteroides sp. 1_1_30, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7696..8448)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 1_1_30 RepID=F7M8W5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGM98319.1}; TaxID=457387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_30.;"
hypothetical protein
L3_106_000M1_scaffold_2332_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8879..9661)
DNA (783bp) protein (261aa)
Hydrolase, carbon-nitrogen family n=2 Tax=Parabacteroides merdae RepID=A7ABL5_9PORP
Hydrolase, carbon-nitrogen family {ECO:0000313|EMBL:EDN87648.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
amidohydrolase
L3_106_000M1_scaffold_2332_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9666..10211)
DNA (546bp) protein (182aa)
Acyltransferase n=4 Tax=Parabacteroides RepID=A7ABL4_9PORP
Acyltransferase {ECO:0000313|EMBL:EDN87647.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
acyltransferase
L3_106_000M1_scaffold_2332_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10222..10506)
DNA (285bp) protein (95aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ABL3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14472.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_2332_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10634..12292
DNA (1659bp) protein (553aa)
Starch synthase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WSY8_9PORP
Starch synthase {ECO:0000313|EMBL:CDD14473.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycosyltransferase family alpha-glycosyltransferase
L3_106_000M1_scaffold_2332_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12400..14970
DNA (2571bp) protein (857aa)
Alpha-glucan phosphorylase n=3 Tax=Parabacteroides RepID=A7ABL1_9PORP
Alpha-glucan phosphorylase {ECO:0000313|EMBL:CDD14474.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycosyltransferase family alpha-glucan phosphorylase
L3_106_000M1_scaffold_2332_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15212..16594)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z5F4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87643.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane protein
L3_106_000M1_scaffold_2332_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16650..17492
DNA (843bp) protein (281aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
7-cyano-7-deazaguanine synthase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y7W0_9PORP
aluminum resistance protein
L3_106_000M1_scaffold_2332_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17525..17992
DNA (468bp) protein (156aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=2 Tax=Parabacteroides merdae RepID=A7ABK8_9PORP
7-cyano-7-deazaguanine reductase
L3_106_000M1_scaffold_2332_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18187..18966
DNA (780bp) protein (260aa)
Uncharacterized protein n=5 Tax=Parabacteroides RepID=A7ABK7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87640.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_106_000M1_scaffold_2332_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19048..20868)
DNA (1821bp) protein (607aa)
DNA polymerase III, subunit gamma and tau n=2 Tax=Parabacteroides merdae RepID=A7ABK6_9PORP
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EDN87639.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA polymerase III subunit gamma/tau
L3_106_000M1_scaffold_2332_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20940..21245
DNA (306bp) protein (102aa)
Septum formation initiator n=4 Tax=Parabacteroides RepID=A7ABK5_9PORP
Septum formation initiator {ECO:0000313|EMBL:CDD14481.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
septum formation initiator-like protein
L3_106_000M1_scaffold_2332_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21246..21575
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y7W4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14482.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_2332_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21723..24101
DNA (2379bp) protein (793aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YBP2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN10767.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
TonB-linked outer membrane receptor
L3_106_000M1_scaffold_2332_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24145..25548
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X5U0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14484.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_2332_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25545..26672
DNA (1128bp) protein (376aa)
PepSY domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WYW4_9PORP
PepSY domain protein {ECO:0000313|EMBL:CDD14485.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
iron uptake factor
Displaying 22 items

View Taxonomy