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L3_106_000M1_scaffold_1707

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1707_1
unknown

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99..326
DNA (228bp) protein (76aa)

This feature has no annotations

L3_106_000M1_scaffold_1707_2
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(308..1174)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Alistipes sp. JC136 RepID=UPI0002889C92
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCZ97759.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L3_106_000M1_scaffold_1707_3
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1262..3211)
DNA (1950bp) protein (650aa)
membrane protein insertase n=1 Tax=Alistipes senegalensis RepID=UPI0003156E76
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L3_106_000M1_scaffold_1707_4
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3470..5092)
DNA (1623bp) protein (541aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
CTP synthase (EC:6.3.4.2)
CTP synthetase n=1 Tax=Alistipes senegalensis RepID=UPI0003160E5D
L3_106_000M1_scaffold_1707_5
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5104..7308)
DNA (2205bp) protein (735aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI000374AB82
Uncharacterized protein {ECO:0000313|EMBL:CDD24870.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L3_106_000M1_scaffold_1707_6
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7480..9459)
DNA (1980bp) protein (660aa)
RNA helicase n=1 Tax=Alistipes senegalensis RepID=UPI0002F5F94A
Superfamily II DNA and RNA helicases
Superfamily II DNA and RNA helicases {ECO:0000313|EMBL:CBK63867.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_106_000M1_scaffold_1707_7
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9587..10258
DNA (672bp) protein (224aa)
PhoP family transcriptional regulator n=1 Tax=Alistipes senegalensis RepID=UPI0002EE0E40
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBK63866.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_106_000M1_scaffold_1707_8
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10463..11557
DNA (1095bp) protein (365aa)
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
gamma-glutamyl kinase n=1 Tax=Alistipes senegalensis RepID=UPI0002FA83AD
L3_106_000M1_scaffold_1707_9
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11559..12815
DNA (1257bp) protein (419aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
glutamate-5-semialdehyde dehydrogenase (EC:1.2.1.41)
gamma-glutamyl phosphate reductase n=1 Tax=Alistipes senegalensis RepID=UPI0002E997E4
L3_106_000M1_scaffold_1707_10
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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12924..13298
DNA (375bp) protein (125aa)
camphor resistance protein CrcB n=1 Tax=Alistipes senegalensis RepID=UPI0003095524
crcB protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L3_106_000M1_scaffold_1707_11
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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13497..14699
DNA (1203bp) protein (401aa)
acetate kinase (EC:2.7.2.1)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020, ECO:0000313|EMBL:CBK63862.1}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020, ECO:0000313|EMBL:CBK63862.1};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
acetate kinase n=1 Tax=Alistipes senegalensis RepID=UPI000367E624
L3_106_000M1_scaffold_1707_12
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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14736..15644
DNA (909bp) protein (303aa)
Phosphotransacetylase (EC:2.3.1.19)
phosphate butyryltransferase n=1 Tax=Alistipes senegalensis RepID=UPI000313768C
Phosphotransacetylase {ECO:0000313|EMBL:CCZ96104.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L3_106_000M1_scaffold_1707_13
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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15691..16758
DNA (1068bp) protein (356aa)
butyrate kinase (EC:2.7.2.7)
Probable butyrate kinase {ECO:0000256|HAMAP-Rule:MF_00542}; Short=BK {ECO:0000256|HAMAP-Rule:MF_00542};; EC=2.7.2.7 {ECO:0000256|HAMAP-Rule:MF_00542, ECO:0000313|EMBL:CBK63860.1};; Branched-chain carboxylic acid kinase {ECO:0000256|HAMAP-Rule:MF_00542}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
Probable butyrate kinase n=2 Tax=Alistipes RepID=D4ILP8_9BACT
L3_106_000M1_scaffold_1707_14
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(16793..18253)
DNA (1461bp) protein (487aa)
membrane protein n=1 Tax=Alistipes senegalensis RepID=UPI00030EBFAC
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CCZ96100.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
membrane protein
L3_106_000M1_scaffold_1707_15
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(18265..19740)
DNA (1476bp) protein (492aa)
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
pyruvate kinase n=1 Tax=Alistipes senegalensis RepID=UPI0002FD15BF
L3_106_000M1_scaffold_1707_16
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(19937..20362)
DNA (426bp) protein (142aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000313|EMBL:CBK63856.1}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000313|EMBL:CBK63856.1};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
3-dehydroquinate dehydratase n=1 Tax=Alistipes senegalensis RepID=UPI0003157F44
L3_106_000M1_scaffold_1707_17
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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20541..21479
DNA (939bp) protein (313aa)
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
thiamine-phosphate kinase n=1 Tax=Alistipes senegalensis RepID=UPI0002F75465
L3_106_000M1_scaffold_1707_18
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(21511..21786)
DNA (276bp) protein (92aa)
septum formation initiator n=1 Tax=Alistipes senegalensis RepID=UPI0002D4484F
Septum formation initiator {ECO:0000313|EMBL:CCZ96096.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
Septum formation initiator.
L3_106_000M1_scaffold_1707_19
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(21787..22422)
DNA (636bp) protein (212aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Alistipes senegalensis RepID=UPI00036D8D0D
organic radical activating enzyme
L3_106_000M1_scaffold_1707_20
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(22422..22964)
DNA (543bp) protein (181aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
hypoxanthine phosphoribosyltransferase n=1 Tax=Alistipes senegalensis RepID=UPI0002D836E6
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CCZ96094.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L3_106_000M1_scaffold_1707_21
Bacteroides nordii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(23235..24095)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI0003169780
Uncharacterized protein {ECO:0000313|EMBL:EIY52811.1}; TaxID=997884 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides nordii CL02T12C05.;"
L3_106_000M1_scaffold_1707_22
Bacteroides nordii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(24132..25673)
DNA (1542bp) protein (514aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI0002EC4C2F
Uncharacterized protein {ECO:0000313|EMBL:EIY52810.1}; TaxID=997884 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides nordii CL02T12C05.;"
hypothetical protein
L3_106_000M1_scaffold_1707_23
Bacteroides nordii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(25690..28782)
DNA (3093bp) protein (1031aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI000380A436
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EIY52809.1}; Flags: Fragment;; TaxID=997884 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides nordii CL02T12C05.;"
Outer membrane receptor proteins, mostly Fe transport
L3_106_000M1_scaffold_1707_24
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(29027..30253)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI0002F856D1
Phage integrase family protein {ECO:0000313|EMBL:KDS27804.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
integrase
L3_106_000M1_scaffold_1707_25
Bacteroides sp. 1_1_30, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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30488..32674
DNA (2187bp) protein (729aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI0003751506
Heparinase II/III-like protein.
Uncharacterized protein {ECO:0000313|EMBL:EGN07594.1}; TaxID=457387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_30.;"
L3_106_000M1_scaffold_1707_26
Coprobacter sp. 177, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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32790..35633
DNA (2844bp) protein (948aa)
sensor histidine kinase/DNA-binding response regulator n=1 Tax=Alistipes sp. JC136 RepID=UPI00028A1BC0
Uncharacterized protein {ECO:0000313|EMBL:KHM46291.1}; TaxID=1572646 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter sp. 177.;"
sensor histidine kinase/DNA-binding response regulator
Displaying 26 items

View Taxonomy