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L3_106_000M1_scaffold_1059

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1059_1
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(28..414)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Megamonas rupellensis RepID=UPI00035E8319
Uncharacterized protein {ECO:0000313|EMBL:EHR36671.1}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
L3_106_000M1_scaffold_1059_2
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(539..1030)
DNA (492bp) protein (164aa)
UPF0234 protein BN533_02004 n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6INM9_9FIRM
UPF0234 protein BN632_00997 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
nucleotide-binding protein
L3_106_000M1_scaffold_1059_3
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

1346..1609
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Megamonas funiformis CAG:377 RepID=R6NHC5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB97227.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
hypothetical protein
L3_106_000M1_scaffold_1059_4
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

1616..2203
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Megamonas funiformis CAG:377 RepID=R6MSJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB97231.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
hypothetical protein
L3_106_000M1_scaffold_1059_5
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

2229..2351
DNA (123bp) protein (41aa)
Uncharacterized protein n=2 Tax=Megamonas RepID=R6MF61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB97235.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
hypothetical protein
L3_106_000M1_scaffold_1059_6
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(2666..3559)
DNA (894bp) protein (298aa)
IS605 OrfB family transposase n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K5H4_9FIRM
IS605 OrfB family transposase {ECO:0000313|EMBL:EHR38692.1}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
putative transposase IS891/IS1136/IS1341 family
L3_106_000M1_scaffold_1059_7
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

4368..4895
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Megamonas rupellensis RepID=UPI00036DFE7A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL06615.1}; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
L3_106_000M1_scaffold_1059_8
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4943..5698)
DNA (756bp) protein (252aa)
xthA; putative exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III (Xth) n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K821_9FIRM
Exodeoxyribonuclease III (Xth) {ECO:0000313|EMBL:CDB97012.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L3_106_000M1_scaffold_1059_9
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(5702..6565)
DNA (864bp) protein (288aa)
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Megamonas RepID=D4KE21_9FIRM
L3_106_000M1_scaffold_1059_10
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(6588..7154)
DNA (567bp) protein (189aa)
RNAse M5 (EC:3.1.26.8)
Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469}; EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469, ECO:0000313|EMBL:CBL06619.1};; RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
Ribonuclease M5 n=2 Tax=Megamonas RepID=D4KE22_9FIRM
L3_106_000M1_scaffold_1059_11
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(7360..8343)
DNA (984bp) protein (328aa)
Putative uncharacterized protein n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K824_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB97022.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
hypothetical protein
L3_106_000M1_scaffold_1059_12
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(8741..9505)
DNA (765bp) protein (255aa)
putative DNase (EC:3.1.21.-)
TatD family hydrolase n=1 Tax=Megamonas funiformis CAG:377 RepID=R6MBT2_9FIRM
TatD family hydrolase {ECO:0000313|EMBL:CDB97023.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L3_106_000M1_scaffold_1059_13
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(9505..11457)
DNA (1953bp) protein (651aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
metG; putative methionyl-tRNA synthetase (EC:6.1.1.10)
methionyl-tRNA synthetase n=1 Tax=Megamonas rupellensis RepID=UPI00035C9AE3
L3_106_000M1_scaffold_1059_14
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

11585..12598
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Megamonas funiformis CAG:377 RepID=R6MM15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB97029.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
hypothetical protein
L3_106_000M1_scaffold_1059_15
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(12675..13532)
DNA (858bp) protein (286aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
methyltransferase n=1 Tax=Megamonas rupellensis RepID=UPI000381E56B
conserved hypothetical protein TIGR00096
L3_106_000M1_scaffold_1059_16
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(13551..14312)
DNA (762bp) protein (254aa)
Uncharacterized protein n=3 Tax=Megamonas RepID=R6MEP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB97035.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
Predicted O-methyltransferase
L3_106_000M1_scaffold_1059_17
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(14296..15123)
DNA (828bp) protein (276aa)
Uncharacterized protein n=3 Tax=Megamonas RepID=R6NGX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB97037.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
hypothetical protein
L3_106_000M1_scaffold_1059_18
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(15150..16142)
DNA (993bp) protein (331aa)
DNA polymerase III, delta' subunit n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K831_9FIRM
DNA polymerase III, delta' subunit {ECO:0000313|EMBL:EHR36687.1}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
hypothetical protein
L3_106_000M1_scaffold_1059_19
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(16144..16503)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Megamonas funiformis CAG:377 RepID=R6MM27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB97044.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L3_106_000M1_scaffold_1059_20
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(16652..17326)
DNA (675bp) protein (225aa)
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165, ECO:0000313|EMBL:CBL06631.1}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165, ECO:0000313|EMBL:CBL06631.1};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
Thymidylate kinase n=2 Tax=Megamonas RepID=D4KE34_9FIRM
L3_106_000M1_scaffold_1059_21
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(17326..18780)
DNA (1455bp) protein (485aa)
arginine decarboxylase (EC:4.1.1.19 4.1.1.18)
Arginine decarboxylase {ECO:0000313|EMBL:CBL06632.1}; EC=4.1.1.18 {ECO:0000313|EMBL:CBL06632.1};; EC=4.1.1.19 {ECO:0000313|EMBL:CBL06632.1};; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
Arginine decarboxylase n=1 Tax=Megamonas hypermegale ART12/1 RepID=D4KE35_9FIRM
L3_106_000M1_scaffold_1059_22
unknown

Not on your lists

comp(18892..19095)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Megamonas rupellensis RepID=UPI00036E0ED7
L3_106_000M1_scaffold_1059_23
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(19101..20219)
DNA (1119bp) protein (373aa)
Diaminopimelate decarboxylase (EC:4.1.1.17)
Diaminopimelate decarboxylase {ECO:0000313|EMBL:CBL06633.1}; EC=4.1.1.17 {ECO:0000313|EMBL:CBL06633.1};; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
Diaminopimelate decarboxylase n=1 Tax=Megamonas hypermegale ART12/1 RepID=D4KE36_9FIRM
L3_106_000M1_scaffold_1059_24
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(20418..22403)
DNA (1986bp) protein (662aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
transketolase (EC:2.2.1.1)
Transketolase n=2 Tax=Megamonas RepID=D4KE37_9FIRM
L3_106_000M1_scaffold_1059_25
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(22675..26838)
DNA (4164bp) protein (1388aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K837_9FIRM
DNA-directed RNA polymerase
L3_106_000M1_scaffold_1059_26
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(27002..30610)
DNA (3609bp) protein (1203aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CBL06644.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CBL06644.1};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Megamonas hypermegale ART12/1 RepID=D4KE47_9FIRM
L3_106_000M1_scaffold_1059_27
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(31352..32071)
DNA (720bp) protein (240aa)
Phosphonate-transporting ATPase (EC:3.6.3.28)
Uncharacterized protein n=2 Tax=Megamonas RepID=R6MES1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHR36695.1}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
L3_106_000M1_scaffold_1059_28
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(32058..32723)
DNA (666bp) protein (222aa)
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region n=2 Tax=Megamonas RepID=H3K840_9FIRM
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region {ECO:0000313|EMBL:EHR36696.1}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
glnP; putative glutamine ABC transporter permease
L3_106_000M1_scaffold_1059_29
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(32817..33608)
DNA (792bp) protein (264aa)
Lysine-arginine-ornithine-binding periplasmic protein n=2 Tax=Megamonas RepID=H3K841_9FIRM
Lysine-arginine-ornithine-binding periplasmic protein {ECO:0000313|EMBL:CDB97065.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L3_106_000M1_scaffold_1059_30
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(33710..33997)
DNA (288bp) protein (96aa)
Uncharacterized protein n=3 Tax=Megamonas RepID=R6MBX1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL06647.1}; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
Displaying items 1-30 of 44 in total

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