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L3_106_000M1_scaffold_2199

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2199_1
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(2..427)
DNA (426bp) protein (142aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
glyA; putative serine hydroxymethyltransferase (EC:2.1.2.1)
serine hydroxymethyltransferase n=1 Tax=Megamonas rupellensis RepID=UPI00035CAEB1
L3_106_000M1_scaffold_2199_2
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(494..940)
DNA (447bp) protein (149aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase n=3 Tax=Megamonas RepID=D4KHN7_9FIRM
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:CDB93601.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L3_106_000M1_scaffold_2199_3
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(1047..2084)
DNA (1038bp) protein (346aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3KAQ4_9FIRM
translation factor SUA5
L3_106_000M1_scaffold_2199_4
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(2069..2950)
DNA (882bp) protein (294aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
[protein release factor]-glutamine N5-methyltransferase (EC:2.1.1.-)
Release factor glutamine methyltransferase n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3KAQ3_9FIRM
L3_106_000M1_scaffold_2199_5
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(2952..4019)
DNA (1068bp) protein (356aa)
Peptide chain release factor 1 n=2 Tax=Megamonas RepID=H3KAQ2_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
prfA; putative peptide chain release factor 1
L3_106_000M1_scaffold_2199_6
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4132..5055)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Megamonas funiformis CAG:377 RepID=R6M585_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB93605.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
hypothetical protein
L3_106_000M1_scaffold_2199_7
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(5172..5372)
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=3 Tax=Megamonas RepID=D4KHP0_9FIRM
LSU ribosomal protein L31P
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
L3_106_000M1_scaffold_2199_8
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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5591..6910
DNA (1320bp) protein (440aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Megamonas funiformis CAG:377 RepID=R6N6M6_9FIRM
ATP-dependent Clp protease, ATP-binding subunit ClpX {ECO:0000313|EMBL:EHR32652.1}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
L3_106_000M1_scaffold_2199_9
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(6992..8254)
DNA (1263bp) protein (421aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=2 Tax=Megamonas RepID=H3KAP7_9FIRM
L3_106_000M1_scaffold_2199_10
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8546..9796
DNA (1251bp) protein (417aa)
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.57 2.6.1.1)
aminotransferase n=1 Tax=Megamonas rupellensis RepID=UPI00036F60A2
Uncharacterized protein {ECO:0000313|EMBL:CDB93609.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L3_106_000M1_scaffold_2199_11
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(9914..10078)
DNA (165bp) protein (55aa)
Uncharacterized protein n=2 Tax=Megamonas RepID=R6M589_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB93610.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
hypothetical protein
L3_106_000M1_scaffold_2199_12
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10102..11220)
DNA (1119bp) protein (373aa)
glutaconyl-CoA decarboxylase beta subunit (EC:4.1.1.3 4.1.1.70)
Glutaconyl-CoA decarboxylase beta subunit {ECO:0000313|EMBL:CBL05775.1}; EC=4.1.1.3 {ECO:0000313|EMBL:CBL05775.1};; EC=4.1.1.70 {ECO:0000313|EMBL:CBL05775.1};; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
Glutaconyl-CoA decarboxylase beta subunit n=3 Tax=Megamonas RepID=D4KHP6_9FIRM
L3_106_000M1_scaffold_2199_13
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11284..11559)
DNA (276bp) protein (92aa)
Oxaloacetate decarboxylase, gamma chain n=3 Tax=Megamonas RepID=D4KHP7_9FIRM
Oxaloacetate decarboxylase, gamma chain.
Oxaloacetate decarboxylase, gamma chain {ECO:0000313|EMBL:CBL05776.1}; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
L3_106_000M1_scaffold_2199_14
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11736..12410)
DNA (675bp) protein (225aa)
Uncharacterized protein n=2 Tax=Megamonas RepID=R6MN11_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL05777.1}; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
L3_106_000M1_scaffold_2199_15
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(12417..12992)
DNA (576bp) protein (192aa)
orotate phosphoribosyltransferase, Thermus family (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
Orotate phosphoribosyltransferase n=1 Tax=Megamonas hypermegale ART12/1 RepID=D4KHP9_9FIRM
L3_106_000M1_scaffold_2199_16
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(12995..13708)
DNA (714bp) protein (238aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
pyrF; putative orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Megamonas funiformis CAG:377 RepID=R6MI48_9FIRM
L3_106_000M1_scaffold_2199_17
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(13839..17090)
DNA (3252bp) protein (1084aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Megamonas funiformis CAG:377 RepID=R6M7S2_9FIRM
L3_106_000M1_scaffold_2199_18
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(17095..18162)
DNA (1068bp) protein (356aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
carbamoyl-phosphate synthase, small subunit (EC:6.3.5.5)
carbamoyl phosphate synthase small subunit n=1 Tax=Megamonas rupellensis RepID=UPI00036D5825
L3_106_000M1_scaffold_2199_19
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18181..19473)
DNA (1293bp) protein (431aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Megamonas funiformis CAG:377 RepID=R6MN07_9FIRM
L3_106_000M1_scaffold_2199_20
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(19457..20482)
DNA (1026bp) protein (342aa)
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
Aspartate carbamoyltransferase n=3 Tax=Megamonas RepID=D4KHQ4_9FIRM
L3_106_000M1_scaffold_2199_21
Centipeda periodontii, Centipeda, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

20783..21457
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI000379DF77
Uncharacterized protein {ECO:0000313|EMBL:EGK61228.1}; TaxID=888060 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Centipeda.;" source="Centipeda periodontii DSM 2778.;"
GntR family transcriptional regulator
L3_106_000M1_scaffold_2199_22
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

21464..22444
DNA (981bp) protein (327aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:AIF49672.1}; EC=1.1.1.60 {ECO:0000313|EMBL:AIF49672.1};; TaxID=484770 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI0003788B7F
L3_106_000M1_scaffold_2199_23
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22508..23935
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI00036937EE
hydroxyacid dehydrogenase/reductase-like protein
Type III effector Hrp-dependent outer protein {ECO:0000313|EMBL:AGY76398.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L3_106_000M1_scaffold_2199_24
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23948..24805
DNA (858bp) protein (286aa)
ketose-bisphosphate aldolase (EC:4.1.2.40)
Fructose-bisphosphate aldolase n=1 Tax=Megamonas funiformis CAG:377 RepID=R6M7R7_9FIRM
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:CDB95673.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L3_106_000M1_scaffold_2199_25
Selenomonas sp. oral taxon 138, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

24802..25158
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI0003617CD4
PTS system glucitol/sorbitol-specific IIA component {ECO:0000313|EMBL:EKX97175.1}; TaxID=1127695 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. oral taxon 138 str. F0429.;"
PTS system glucitol/sorbitol-specific IIA component
L3_106_000M1_scaffold_2199_26
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

25171..26508
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI0003669DFC
Gluconate transporter {ECO:0000313|EMBL:EAX48891.1}; Flags: Precursor;; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
gluconate transporter
L3_106_000M1_scaffold_2199_27
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

26561..27112
DNA (552bp) protein (184aa)
putative carbonic anhydrase (EC:4.2.1.1)
Uncharacterized protein n=1 Tax=Megamonas funiformis CAG:377 RepID=R6MEV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB98183.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L3_106_000M1_scaffold_2199_28
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(27164..27721)
DNA (558bp) protein (186aa)
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) (EC:3.2.1.-)
Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains) n=1 Tax=Megamonas funiformis CAG:377 RepID=R6MM98_9FIRM
Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains) {ECO:0000313|EMBL:CDB95411.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L3_106_000M1_scaffold_2199_29
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(27879..28277)
DNA (399bp) protein (133aa)
IS605 OrfB family transposase (Fragment) n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K9X4_9FIRM
IS605 OrfB family transposase {ECO:0000313|EMBL:EHR34182.1}; Flags: Fragment;; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
IS605 OrfB family transposase
Displaying 29 items

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