ggKbase home page

L3_106_000M1_scaffold_417

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_417_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(69..1097)
DNA (1029bp) protein (343aa)
Transcriptional regulator, XRE family n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UHA6_RUMA7
Putative bacteriophage integrase
Putative bacteriophage integrase {ECO:0000313|EMBL:CCO03950.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_106_000M1_scaffold_417_2
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(1101..1316)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZKW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15270.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_106_000M1_scaffold_417_3
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1641..1841
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C213_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI78098.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_106_000M1_scaffold_417_4
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1953..2150)
DNA (198bp) protein (66aa)
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DEY3_9CLOT
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein {ECO:0000313|EMBL:ERI78101.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein predicted by Glimmer/Critica
L3_106_000M1_scaffold_417_5
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

2481..2735
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XZX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15269.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_106_000M1_scaffold_417_6
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2907..3344
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C931_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO34904.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_106_000M1_scaffold_417_7
unknown

Not on your lists

3341..3604
DNA (264bp) protein (88aa)

This feature has no annotations

L3_106_000M1_scaffold_417_8
unknown

Not on your lists

3601..3927
DNA (327bp) protein (109aa)

This feature has no annotations

L3_106_000M1_scaffold_417_9
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3920..4075
DNA (156bp) protein (52aa)
Uncharacterized protein {ECO:0000313|EMBL:KGF56822.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_106_000M1_scaffold_417_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4204..4770)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BL60_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF56823.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_106_000M1_scaffold_417_11
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4798..5382)
DNA (585bp) protein (195aa)
Sigma-70, region 4 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D098_9CLOT
Sigma-70, region 4 {ECO:0000313|EMBL:ERI72971.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_106_000M1_scaffold_417_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5448..5834)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YQ75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM51928.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_106_000M1_scaffold_417_13
unknown

Not on your lists

comp(5788..5886)
DNA (99bp) protein (33aa)

This feature has no annotations

L3_106_000M1_scaffold_417_14
unknown

Not on your lists

comp(5883..6071)
DNA (189bp) protein (63aa)

This feature has no annotations

L3_106_000M1_scaffold_417_15
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6200..8572)
DNA (2373bp) protein (791aa)
hypothetical protein n=1 Tax=Anaeromusa acidaminophila RepID=UPI00036C2D5A
hypothetical protein
Phage-related protein {ECO:0000313|EMBL:EDK35239.1}; TaxID=431943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680).;"
L3_106_000M1_scaffold_417_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8578..8979)
DNA (402bp) protein (134aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YX15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56829.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_106_000M1_scaffold_417_17
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8984..9202)
DNA (219bp) protein (73aa)
DNA binding domain, excisionase family n=2 Tax=Clostridiales RepID=G9YX16_9FIRM
DNA binding domain, excisionase family {ECO:0000313|EMBL:ERI72494.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_106_000M1_scaffold_417_18
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9822..10607)
DNA (786bp) protein (262aa)
Transcriptional regulator n=1 Tax=Geobacillus sp. GHH01 RepID=L7ZZD9_9BACI
IclR family transcriptional regulator
IclR family transcriptional regulator {ECO:0000313|EMBL:AKA67548.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L3_106_000M1_scaffold_417_19
Bacillus halodurans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11057..12124
DNA (1068bp) protein (356aa)
C4-dicarboxylate transport system (C4-dicarboxylate-binding protein) n=1 Tax=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) RepID=Q9K9H4_BACHD
C4-dicarboxylate transporter C4-dicarboxylate-binding protein
C4-dicarboxylate transport system (C4-dicarboxylate-binding protein) {ECO:0000313|EMBL:BAB06392.1}; TaxID=272558 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM; 9153 / C-125).;"
L3_106_000M1_scaffold_417_20
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

12192..12689
DNA (498bp) protein (166aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5EH31_AMICL
tripartite AtP-independent periplasmic transporter subunit DctQ
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ADE57863.1}; TaxID=572547 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminobacterium.;" source="Aminobacterium colombiense (strain DSM 12261 / ALA-1).;"
L3_106_000M1_scaffold_417_21
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12686..13957
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI0002EF3BF4
TRAP dicarboxylate transporter subunit DctM {ECO:0000313|EMBL:EMT54647.1}; TaxID=1300222 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus borstelensis AK1.;"
TRAP transporter, dctm subunit
L3_106_000M1_scaffold_417_22
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14009..15628
DNA (1620bp) protein (540aa)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=1408254 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus panacihumi W25.;"
Uncharacterized protein n=1 Tax=Brevibacillus panacihumi W25 RepID=V6M2V2_9BACL
hypothetical protein
L3_106_000M1_scaffold_417_23
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

15664..16128
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FMF6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCY06225.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
MaoC domain-containing protein dehydratase
L3_106_000M1_scaffold_417_24
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16130..16603
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5G168_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCY06226.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
L3_106_000M1_scaffold_417_25
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16627..17505
DNA (879bp) protein (293aa)
aroE; shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Shikimate dehydrogenase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KWC1_OSCVS
L3_106_000M1_scaffold_417_26
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17502..18263
DNA (762bp) protein (254aa)
aroD; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
3-dehydroquinate dehydratase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KWC0_OSCVS
L3_106_000M1_scaffold_417_27
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18469..24894)
DNA (6426bp) protein (2142aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2Q2P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK58586.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_106_000M1_scaffold_417_28
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24960..25784)
DNA (825bp) protein (275aa)
Phage integrase, SAM-like domain protein n=2 Tax=Oscillibacter RepID=U2S1H3_9FIRM
Phage integrase, SAM-like domain protein {ECO:0000313|EMBL:ERK66287.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
integrase family protein
L3_106_000M1_scaffold_417_29
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26136..26978)
DNA (843bp) protein (281aa)
Uncharacterized protein n=2 Tax=Anaerotruncus sp. G3(2012) RepID=R9LI42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS58385.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
integrase family protein
L3_106_000M1_scaffold_417_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27187..28581
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46771.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
Displaying items 1-30 of 88 in total

View Taxonomy