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L3_106_000M1_scaffold_3954

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_3954_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..265
DNA (264bp) protein (88aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA C-acetyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5S060_9FIRM
Acetyl-CoA C-acetyltransferase {ECO:0000313|EMBL:EQN60278.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_3954_2
unknown

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comp(504..605)
DNA (102bp) protein (34aa)

This feature has no annotations

L3_106_000M1_scaffold_3954_3
unknown

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comp(661..879)
DNA (219bp) protein (73aa)

This feature has no annotations

L3_106_000M1_scaffold_3954_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1338..1781)
DNA (444bp) protein (148aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative deaminase (EC:3.5.4.-)
Cytosine deaminase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG15_9FIRM
L3_106_000M1_scaffold_3954_5
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(1771..1905)
DNA (135bp) protein (45aa)
hypothetical protein n=1 Tax=Bacillus sp. ZYK RepID=UPI0003130403
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCP25710.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
L3_106_000M1_scaffold_3954_6
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(2017..3333)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XZ25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14969.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
spoIIP; stage II sporulation protein P
L3_106_000M1_scaffold_3954_7
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3400..4800)
DNA (1401bp) protein (467aa)
Putative sodium/glutamate symporter n=3 Tax=Clostridium RepID=U2D902_CLOSY
Putative sodium/glutamate symporter {ECO:0000313|EMBL:ERI77947.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
sodium:glutamate symporter
L3_106_000M1_scaffold_3954_8
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4856..5944)
DNA (1089bp) protein (363aa)
4-phosphoerythronate dehydrogenase n=2 Tax=Clostridium symbiosum RepID=E9SSJ7_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91748.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
2-hydroxyacid dehydrogenase
L3_106_000M1_scaffold_3954_9
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6363..7313
DNA (951bp) protein (317aa)
Transcriptional regulator, AraC family n=2 Tax=Clostridium symbiosum RepID=U2C1K9_CLOSY
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERI77953.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
putative AraC family transcriptional regulator
L3_106_000M1_scaffold_3954_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7423..8421)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45727.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
inner-membrane translocator
L3_106_000M1_scaffold_3954_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8421..9524)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45728.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
inner-membrane translocator
L3_106_000M1_scaffold_3954_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9527..11146)
DNA (1620bp) protein (540aa)
Simple sugar transport system ATP-binding protein (EC:3.6.3.-)
Simple sugar transport system ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGC5_9FIRM
Simple sugar transport system ATP-binding protein {ECO:0000313|EMBL:EGJ45729.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_3954_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11359..12669)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGC6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45730.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
basic membrane lipoprotein
L3_106_000M1_scaffold_3954_14
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(12751..13326)
DNA (576bp) protein (192aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Xanthine phosphoribosyltransferase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZKA5_9FIRM
xanthine phosphoribosyltransferase
L3_106_000M1_scaffold_3954_15
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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13757..14233
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KR83_OSCVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK99906.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_106_000M1_scaffold_3954_16
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14280..15299)
DNA (1020bp) protein (340aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T897_9FIRM
L3_106_000M1_scaffold_3954_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15614..15970)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45746.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
sodium:dicarboxylate symporter
Displaying 17 items

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