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L3_106_000M1_scaffold_189

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_189_1
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(119..928)
DNA (810bp) protein (270aa)
Putative DNA-invertase n=3 Tax=Clostridiales RepID=G9YLZ0_9FIRM
Putative DNA-invertase {ECO:0000313|EMBL:ERI73035.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_106_000M1_scaffold_189_2
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1776..2882
DNA (1107bp) protein (369aa)
ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TWK2_9FIRM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_106_000M1_scaffold_189_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2863..3510
DNA (648bp) protein (216aa)
ribE; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
Riboflavin synthase, alpha subunit n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XB49_9FIRM
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:EGJ47577.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_189_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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3535..4737
DNA (1203bp) protein (401aa)
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12)
Riboflavin biosynthesis protein RibBA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XB50_9FIRM
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_189_5
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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4763..5230
DNA (468bp) protein (156aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TJ68_9FIRM
L3_106_000M1_scaffold_189_6
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(6284..7501)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YBZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13903.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
beta-lactamase domain protein
L3_106_000M1_scaffold_189_7
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7535..9442)
DNA (1908bp) protein (636aa)
acyl-CoA dehydrogenase/protein FixB (EC:1.3.99.-)
Butyryl-CoA dehydrogenase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MC58_9FIRM
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:EOS65447.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_106_000M1_scaffold_189_8
unknown

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10620..10889
DNA (270bp) protein (90aa)

This feature has no annotations

L3_106_000M1_scaffold_189_9
unknown

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11076..11300
DNA (225bp) protein (75aa)

This feature has no annotations

L3_106_000M1_scaffold_189_10
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11746..13557)
DNA (1812bp) protein (604aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T9W2_9FIRM
hypothetical protein
L3_106_000M1_scaffold_189_11
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13550..14008)
DNA (459bp) protein (153aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QGW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK62140.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_106_000M1_scaffold_189_12
unknown

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comp(14214..14753)
DNA (540bp) protein (180aa)

This feature has no annotations

L3_106_000M1_scaffold_189_13
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15234..15779)
DNA (546bp) protein (182aa)
Transcriptional regulator TetR family n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TQN0_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDC70206.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
Bacterial regulatory proteins, tetR family.
L3_106_000M1_scaffold_189_14
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15939..19559)
DNA (3621bp) protein (1207aa)
Repeat protein n=2 Tax=Oscillibacter RepID=U2Q2N4_9FIRM
Repeat protein {ECO:0000313|EMBL:ERK56975.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
cell surface glycoprotein 2
L3_106_000M1_scaffold_189_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(19958..20800)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13567.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
integrase family protein
L3_106_000M1_scaffold_189_16
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20956..21687
DNA (732bp) protein (244aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2Q1D3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK56555.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_106_000M1_scaffold_189_17
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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21705..24365
DNA (2661bp) protein (887aa)
Small GTP-binding protein domain protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MAP0_9FIRM
Small GTP-binding protein domain protein {ECO:0000313|EMBL:EOS67741.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
putative small GTP-binding protein
L3_106_000M1_scaffold_189_18
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24359..24754
DNA (396bp) protein (132aa)
Lipoprotein signal peptidase {ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|SAAS:SAAS00112508};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
signal peptidase II (EC:3.4.23.36)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MIU6_9FIRM
L3_106_000M1_scaffold_189_19
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

24924..25397
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XV53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13544.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
RNA polymerase ECF subfamily sigma factor
L3_106_000M1_scaffold_189_20
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25394..26557
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TR52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC70381.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_106_000M1_scaffold_189_21
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26684..27454
DNA (771bp) protein (257aa)
ABC transporter ATP-binding protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M687_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EOS66333.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
putative ABC transporter ATP-binding protein
L3_106_000M1_scaffold_189_22
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27447..28859
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M5L8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS66334.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
ABC transporter permease protein
L3_106_000M1_scaffold_189_23
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29080..30258
DNA (1179bp) protein (393aa)
mgs; 1,2-diacylglycerol 3-glucosyltransferase (EC:2.4.1.157)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M5T5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS66335.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_106_000M1_scaffold_189_24
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30255..30845
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M6P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS66336.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_106_000M1_scaffold_189_25
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30859..31935
DNA (1077bp) protein (359aa)
dgs; 1,2-diacylglycerol-3-glucose glucosyltransferase (EC:2.4.1.-)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MES4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS66337.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_106_000M1_scaffold_189_26
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32068..32394
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:786 RepID=R5GL59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY17958.1}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
hypothetical protein
L3_106_000M1_scaffold_189_27
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32485..32757)
DNA (273bp) protein (91aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QZ99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK61499.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_106_000M1_scaffold_189_28
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32813..34888)
DNA (2076bp) protein (692aa)
spoIIE; putative stage II sporulation protein E (EC:3.1.3.16)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M2E1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65224.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_106_000M1_scaffold_189_29
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35060..36028
DNA (969bp) protein (323aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
tRNA-dihydrouridine synthase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M2L9_9FIRM
dus; tRNA-dihydrouridine synthase
L3_106_000M1_scaffold_189_30
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36025..36633
DNA (609bp) protein (203aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M3H2_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EOS65226.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
RNA polymerase ECF subfamily sigma factor
Displaying items 1-30 of 109 in total

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