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L3_106_000M1_scaffold_2805

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2805_1
unknown

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comp(3..203)
DNA (201bp) protein (67aa)

This feature has no annotations

L3_106_000M1_scaffold_2805_2
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(206..1030)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M081_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64243.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_106_000M1_scaffold_2805_3
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1027..1581)
DNA (555bp) protein (185aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M8R1_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EOS64242.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_106_000M1_scaffold_2805_4
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1761..3119)
DNA (1359bp) protein (453aa)
UPF0210 protein HMPREF1546_01322 n=2 Tax=Oscillibacter RepID=U2R9W7_9FIRM
UPF0210 protein HMPREF1546_01322 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_106_000M1_scaffold_2805_5
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3197..3466)
DNA (270bp) protein (90aa)
UPF0237 protein HMPREF1545_02447 n=2 Tax=Oscillibacter RepID=U2Q7J1_9FIRM
UPF0237 protein HMPREF1546_01320 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_106_000M1_scaffold_2805_6
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3572..3739)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2ALD1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ25264.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
L3_106_000M1_scaffold_2805_7
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3783..4994)
DNA (1212bp) protein (404aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
ask; aspartokinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TTT0_9FIRM
L3_106_000M1_scaffold_2805_8
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5064..6257)
DNA (1194bp) protein (398aa)
hom; homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Homoserine dehydrogenase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KP39_OSCVS
L3_106_000M1_scaffold_2805_9
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6279..6719)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TGI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC71365.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_106_000M1_scaffold_2805_10
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6983..8404)
DNA (1422bp) protein (474aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=2 Tax=Oscillibacter RepID=U2R8W9_9FIRM
L3_106_000M1_scaffold_2805_11
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8391..10061)
DNA (1671bp) protein (557aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=2 Tax=Oscillibacter RepID=U2QQX3_9FIRM
Dephospho-CoA kinase {ECO:0000313|EMBL:ERK65325.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_106_000M1_scaffold_2805_12
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10163..11227)
DNA (1065bp) protein (355aa)
Peptide chain release factor 1 n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UKU8_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
prfA; peptide chain release factor 1
L3_106_000M1_scaffold_2805_13
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11268..11771)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TGM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC71410.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_106_000M1_scaffold_2805_14
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11771..12607)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TDB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC71413.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_106_000M1_scaffold_2805_15
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12588..14483)
DNA (1896bp) protein (632aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TU10_9FIRM
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDC71416.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
putative ABC transporter ATP-binding protein
L3_106_000M1_scaffold_2805_16
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14476..15849)
DNA (1374bp) protein (458aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=2 Tax=Oscillibacter RepID=U2QQW8_9FIRM
L3_106_000M1_scaffold_2805_17
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15857..16990)
DNA (1134bp) protein (378aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ddl; D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=2 Tax=Oscillibacter RepID=U2QKE1_9FIRM
L3_106_000M1_scaffold_2805_18
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17791..18771)
DNA (981bp) protein (327aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2R3C1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK65318.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative surface layer protein
L3_106_000M1_scaffold_2805_19
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18923..19843
DNA (921bp) protein (307aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
pseudouridine synthase (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T7E9_9FIRM
L3_106_000M1_scaffold_2805_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19888..21585)
DNA (1698bp) protein (566aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45638.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_2805_21
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(21587..22507)
DNA (921bp) protein (307aa)
Putative nitric-oxide reductase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D2A8_9FIRM
Putative nitric-oxide reductase {ECO:0000313|EMBL:CDA81960.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
AAA domain (dynein-related subfamily).
L3_106_000M1_scaffold_2805_22
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22689..22793)
DNA (105bp) protein (35aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZHW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ13603.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
Displaying 22 items

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