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L3_106_000M1_scaffold_1885

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1885_1
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(1..1449)
DNA (1449bp) protein (483aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DSY2_9FIRM
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDA81012.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
L3_106_000M1_scaffold_1885_2
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2020..2352
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TYI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC72966.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_106_000M1_scaffold_1885_3
unknown

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comp(2943..4685)
DNA (1743bp) protein (581aa)

This feature has no annotations

L3_106_000M1_scaffold_1885_4
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5282..6154)
DNA (873bp) protein (291aa)
EDD domain protein, DegV family n=2 Tax=Oscillibacter RepID=U2RQR3_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:EDN01629.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
EDD domain protein, DegV family
L3_106_000M1_scaffold_1885_5
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6869..7072)
DNA (204bp) protein (68aa)
Putative uncharacterized protein id=1826774 bin=GWE2_Clostridiales_32_10 species=[Bacteroides] pectinophilus genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
Uncharacterized protein {ECO:0000313|EMBL:CDC18832.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
hypothetical protein
L3_106_000M1_scaffold_1885_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7131..7325)
DNA (195bp) protein (65aa)
Small, acid-soluble spore protein, alpha/beta type n=2 Tax=Clostridium RepID=B6FRX0_9CLOT
Small, acid-soluble spore protein, alpha/beta type {ECO:0000313|EMBL:EEA81254.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Small, acid-soluble spore proteins, alpha/beta type.
L3_106_000M1_scaffold_1885_7
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7745..8218)
DNA (474bp) protein (158aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FEK5_9FIRM
L3_106_000M1_scaffold_1885_8
Treponema phagedenis, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(8296..8793)
DNA (498bp) protein (166aa)
Acetyltransferase, GNAT family n=1 Tax=Treponema phagedenis F0421 RepID=E7NV17_TREPH
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFW37595.1}; TaxID=754027 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema phagedenis F0421.;"
hypothetical protein
L3_106_000M1_scaffold_1885_9
unknown

Not on your lists

8922..9131
DNA (210bp) protein (70aa)
hypothetical protein
L3_106_000M1_scaffold_1885_10
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9441..10661
DNA (1221bp) protein (407aa)
Glycosyl hydrolase family 25 n=1 Tax=Clostridium sp. CAG:343 RepID=R6P966_9CLOT
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:CDC06437.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L3_106_000M1_scaffold_1885_11
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10664..11614)
DNA (951bp) protein (317aa)
methionine-R-sulfoxide reductase (EC:1.8.4.11 1.8.4.12)
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:ADL05192.1}; EC=1.8.4.11 {ECO:0000313|EMBL:ADL05192.1};; EC=1.8.4.12 {ECO:0000313|EMBL:ADL05192.1};; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
Methionine-R-sulfoxide reductase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R5K9_CLOSW
L3_106_000M1_scaffold_1885_12
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11940..13328)
DNA (1389bp) protein (463aa)
tryptophanase (EC:4.1.99.1)
Tryptophanase {ECO:0000256|HAMAP-Rule:MF_00544, ECO:0000256|SAAS:SAAS00048909}; EC=4.1.99.1 {ECO:0000256|HAMAP-Rule:MF_00544, ECO:0000256|SAAS:SAAS00048909};; L-tryptophan indole-lyase {ECO:0000256|HAMAP-Rule:MF_00544}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
Tryptophanase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R099_CLOSW
L3_106_000M1_scaffold_1885_13
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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comp(13521..14159)
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IDR4_9CLOT
hypothetical protein
Tax=RBG_16_Spirochaete_67_19_curated
L3_106_000M1_scaffold_1885_14
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(14172..15173)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=WS1 bacterium JGI 0000059-K21 RepID=UPI00037858A3
dhaK; dihydroxyacetone kinase dihydroxyacetone-binding subunit DhaK
Tax=RBG_13_Chloroflexi_46_14_curated
L3_106_000M1_scaffold_1885_15
R_Elusimicrobia_39_32, Elusimicrobia, Bacteria

Not on your lists

comp(15209..15988)
DNA (780bp) protein (260aa)
Short-chain dehydrogenase/reductase SDR id=4830673 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
short-chain dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Elusimicrobia_39_32_curated
L3_106_000M1_scaffold_1885_16
Bacillus halodurans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16014..16769)
DNA (756bp) protein (252aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier protein) reductase {ECO:0000313|EMBL:BAB06210.1}; EC=1.1.1.100 {ECO:0000313|EMBL:BAB06210.1};; TaxID=272558 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM; 9153 / C-125).;"
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) RepID=Q9KA03_BACHD
L3_106_000M1_scaffold_1885_17
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(16783..17556)
DNA (774bp) protein (258aa)
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U2YVC9_9EURY
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAD52727.1}; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae.;" source="Halarchaeum acidiphilum MH1-52-1.;"
3-oxoacyl-ACP reductase
L3_106_000M1_scaffold_1885_18
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17628..18851)
DNA (1224bp) protein (408aa)
ABC transporter branched-chain amino acid-binding protein LivK n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IWD2_9FIRM
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJS50615.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
putative high-affinity branched-chain amino acid ABC transporter amino acid-binding protein
L3_106_000M1_scaffold_1885_19
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18883..19590)
DNA (708bp) protein (236aa)
Fe(3+)-transporting ATPase (EC:3.6.3.30)
Uncharacterized protein n=2 Tax=Blautia RepID=R5C5H6_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEG49260.1}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
L3_106_000M1_scaffold_1885_20
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(19571..20359)
DNA (789bp) protein (263aa)
ABC transporter n=1 Tax=Meiothermus timidus RepID=UPI00036F0A3F
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABU57985.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
L3_106_000M1_scaffold_1885_21
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20361..21380)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI00031277A9
Uncharacterized protein {ECO:0000313|EMBL:KGK87783.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
livM2; high-affinity branched-chain amino acid ABC transporter system permease LivM
L3_106_000M1_scaffold_1885_22
RifOxyA12_full_Desulfobacterales_46_15_curated, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21377..22270)
DNA (894bp) protein (298aa)
Branched-chain amino acid transport system permease n=2 Tax=Bilophila RepID=E5Y3A3_BILWA
inner-membrane translocator
Tax=RifOxyA12_full_Desulfobacterales_46_15_curated
L3_106_000M1_scaffold_1885_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22456..23025)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HGZ4_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHJ95590.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
L3_106_000M1_scaffold_1885_24
unknown

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comp(23039..23473)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI00035CCF5D
L3_106_000M1_scaffold_1885_25
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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23949..24323
DNA (375bp) protein (125aa)
Lactoylglutathione lyase n=1 Tax=Clostridium hathewayi 12489931 RepID=N9VP44_9CLOT
Lactoylglutathione lyase {ECO:0000313|EMBL:ENY92470.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
L3_106_000M1_scaffold_1885_26
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24432..25691
DNA (1260bp) protein (420aa)
ROK family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D7N1_9CLOT
ROK family protein {ECO:0000313|EMBL:EEG52651.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ROK family protein
L3_106_000M1_scaffold_1885_27
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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25720..26097
DNA (378bp) protein (126aa)
Endoribonuclease L-PSP n=3 Tax=Lachnospiraceae RepID=F3ABY4_9FIRM
endoribonuclease L-PSP, putative
Endoribonuclease L-PSP {ECO:0000313|EMBL:EGG80138.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
L3_106_000M1_scaffold_1885_28
Acidianus hospitalis, Acidianus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

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26534..27187
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Acidianus hospitalis (strain W1) RepID=F4B4D7_ACIHW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE93026.1}; TaxID=933801 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Acidianus.;" source="Acidianus hospitalis (strain W1).;"
L3_106_000M1_scaffold_1885_29
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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27232..27810
DNA (579bp) protein (193aa)
Antifreeze protein n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7KE08_9FIRM
Antifreeze protein {ECO:0000313|EMBL:CDE73192.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
L3_106_000M1_scaffold_1885_30
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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comp(28021..28380)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F0N9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB02596.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
hypothetical protein
Displaying items 1-30 of 35 in total

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