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L3_106_000M1_scaffold_4240

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_4240_1
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..605
DNA (603bp) protein (201aa)
Putative regulatory protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KUC8_OSCVS
putative regulatory protein
Putative regulatory protein {ECO:0000313|EMBL:BAK97969.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_106_000M1_scaffold_4240_2
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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618..1646
DNA (1029bp) protein (343aa)
urea amidolyase-like protein (EC:6.3.4.6)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LXQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63111.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
L3_106_000M1_scaffold_4240_3
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

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1890..2729
DNA (840bp) protein (280aa)
Sporulation sigma-E factor-processing peptidase {ECO:0000256|PIRNR:PIRNR018571}; EC=3.4.23.- {ECO:0000256|PIRNR:PIRNR018571};; Membrane-associated aspartic protease {ECO:0000256|PIRNR:PIRNR018571}; Stage II sporulation protein GA {ECO:0000256|PIRNR:PIRNR018571}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI000367CE23
L3_106_000M1_scaffold_4240_4
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2742..3449
DNA (708bp) protein (236aa)
RNA polymerase sigma factor n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B025_CLOA9
sigE; RNA polymerase sigma-E factor SigE
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
L3_106_000M1_scaffold_4240_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3576..3977
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99360.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_106_000M1_scaffold_4240_6
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4075..4815)
DNA (741bp) protein (247aa)
HTH-type transcriptional activator Mta n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MHH1_9CLOT
mta; HTH-type transcriptional activator mta
HTH-type transcriptional activator mta {ECO:0000313|EMBL:CDM69380.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_106_000M1_scaffold_4240_7
Coprococcus sp. CAG:782, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5079..5522)
DNA (444bp) protein (148aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1262863 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:782.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Coprococcus sp. CAG:782 RepID=R5JVJ3_9FIRM
L3_106_000M1_scaffold_4240_8
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(5627..6400)
DNA (774bp) protein (258aa)
RNA polymerase sigma factor n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZZ08_MAHA5
RNA polymerase sigma subunit RpsG/SigG
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_106_000M1_scaffold_4240_9
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6599..7843)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ALG1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX41617.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
putative peptidoglycan-binding domain-containing protein
L3_106_000M1_scaffold_4240_10
unknown

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comp(7986..8276)
DNA (291bp) protein (97aa)

This feature has no annotations

L3_106_000M1_scaffold_4240_11
Erysipelotrichaceae bacterium 5_2_54FAA, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8399..11428)
DNA (3030bp) protein (1010aa)
sbcC; exonuclease SbcC (EC:3.1.11.-)
Exonuclease SbcC n=1 Tax=Erysipelotrichaceae bacterium 5_2_54FAA RepID=U5FA39_9FIRM
Exonuclease SbcC {ECO:0000313|EMBL:EFE47168.1}; TaxID=552396 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 5_2_54FAA.;"
L3_106_000M1_scaffold_4240_12
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11439..12554)
DNA (1116bp) protein (372aa)
Exonuclease SbcCD, D subunit n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LIR8_9FIRM
Exonuclease SbcCD, D subunit {ECO:0000313|EMBL:EOS58625.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_106_000M1_scaffold_4240_13
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12803..13498)
DNA (696bp) protein (232aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=E9STU1_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF04686.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
kdpE; OmpR family two component system KDP operon response regulator
L3_106_000M1_scaffold_4240_14
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13491..14708)
DNA (1218bp) protein (406aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Osmosensitive K+ channel histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium symbiosum RepID=E9STU0_CLOSY
Displaying 14 items

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