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L3_106_000M1_scaffold_7283

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_7283_1
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..315
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Enterococcus saccharolyticus 30_1 RepID=G5IQL1_9ENTE
Cation-transporting ATPase,Probable cation-transporting ATPase F,magnesium-transporting ATPase MgtA,Uncharacterized protein conserved in bacteria,plasma-membrane proton-efflux P-type ATPase,E1-E2 ATPase {ECO:0000313|EMBL:CEK35129.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
cation-transporting ATPase
L3_106_000M1_scaffold_7283_2
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(394..897)
DNA (504bp) protein (168aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Peptide deformylase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IF65_9FIRM
peptide deformylase
L3_106_000M1_scaffold_7283_3
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(913..3330)
DNA (2418bp) protein (806aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
Primosome assembly protein PriA n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AHT1_9CLOT
primosomal protein N'
L3_106_000M1_scaffold_7283_4
Paenibacillus larvae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3578..4786)
DNA (1209bp) protein (403aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase n=1 Tax=Bacillus alcalophilus ATCC 27647 RepID=J8TNZ7_BACAO
coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
Putative coenzyme A biosynthesis bifunctional protein CoaBC {ECO:0000313|EMBL:ETK25619.1}; TaxID=697286 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus larvae subsp. larvae DSM 25719.;"
L3_106_000M1_scaffold_7283_5
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4779..4991)
DNA (213bp) protein (71aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
DNA-directed RNA polymerase subunit omega n=7 Tax=Clostridium thermocellum RepID=A3DF17_CLOTH
DNA-directed RNA polymerase subunit omega
L3_106_000M1_scaffold_7283_6
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(4995..5582)
DNA (588bp) protein (196aa)
guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
Guanylate kinase n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A2D0_MAHA5
L3_106_000M1_scaffold_7283_7
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5604..5864)
DNA (261bp) protein (87aa)
UPF0296 protein Clo1100_2122 n=3 Tax=Clostridium RepID=H2JD75_9CLOT
hypothetical protein
UPF0296 protein L323_05280 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
L3_106_000M1_scaffold_7283_8
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5879..6754)
DNA (876bp) protein (292aa)
YicC domain protein n=1 Tax=Clostridium thermocellum JW20 RepID=D1NJB3_CLOTM
hypothetical protein
YicC-like domain-containing protein {ECO:0000313|EMBL:ABN52549.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_106_000M1_scaffold_7283_9
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7324..7926)
DNA (603bp) protein (201aa)
ligA; NAD-dependent DNA ligase LigA (EC:6.5.1.2)
DNA ligase n=1 Tax=Clostridium sp. CAG:221 RepID=R6G1M8_9CLOT
Tax=BJP_IG2157_Clostridiales_52_13
Displaying 9 items

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