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L3_106_000M1_scaffold_3396

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_3396_1
unknown

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2..220
DNA (219bp) protein (73aa)

This feature has no annotations

L3_106_000M1_scaffold_3396_2
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

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276..1889
DNA (1614bp) protein (538aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
CTP synthase (EC:6.3.4.2)
CTP synthase n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RPK6_9CLOT
L3_106_000M1_scaffold_3396_3
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2321..3898
DNA (1578bp) protein (526aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
Transcription termination factor Rho n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AH90_9CLOT
transcription termination factor Rho
L3_106_000M1_scaffold_3396_4
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3983..4183
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IKL6_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
50S ribosomal protein L31
L3_106_000M1_scaffold_3396_5
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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4250..5275
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZX09_MAHA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE95458.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_106_000M1_scaffold_3396_6
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5272..6111
DNA (840bp) protein (280aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Release factor glutamine methyltransferase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PSZ6_9FIRM
protein-(glutamine-N5) methyltransferase
L3_106_000M1_scaffold_3396_7
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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6131..7201
DNA (1071bp) protein (357aa)
Peptide chain release factor 1 n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6EN15_9FIRM
peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
L3_106_000M1_scaffold_3396_8
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7216..8271
DNA (1056bp) protein (352aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Clostridium sp. CAG:75 RepID=R5SKQ6_9CLOT
Sua5/YciO/YrdC/YwlC family protein
L3_106_000M1_scaffold_3396_9
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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8273..8764
DNA (492bp) protein (164aa)
Low molecular weight protein-tyrosine-phosphatase {ECO:0000313|EMBL:ABB13924.1}; EC=3.1.3.48 {ECO:0000313|EMBL:ABB13924.1};; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
Low molecular weight protein-tyrosine-phosphatase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A932_CARHZ
protein tyrosine phosphatase
L3_106_000M1_scaffold_3396_10
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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8830..9282
DNA (453bp) protein (151aa)
sugar-phosphate isomerase (EC:5.3.1.6)
RpiB/LacA/LacB family sugar-phosphate isomerase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HHX2_9CLOT
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:KEO83352.1}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
L3_106_000M1_scaffold_3396_11
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

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9298..9927
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
upp; uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Caloramator australicus RC3 RepID=G0V4H1_9CLOT
L3_106_000M1_scaffold_3396_12
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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9940..10251
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A009_MAHA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE95827.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_106_000M1_scaffold_3396_13
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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10304..12241
DNA (1938bp) protein (646aa)
V-type ATPase 116 kDa subunit n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A010_MAHA5
V-type ATPase 116 kDa subunit
V-type ATP synthase subunit I {ECO:0000256|RuleBase:RU361189}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_106_000M1_scaffold_3396_14
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12281..12763
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:557 RepID=R6GRW3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB23971.1}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
H+transporting two-sector ATPase C subunit
L3_106_000M1_scaffold_3396_15
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12780..13379
DNA (600bp) protein (200aa)
V-type ATP synthase subunit E n=7 Tax=Clostridium thermocellum RepID=VATE_CLOTH
H+-transporting two-sector ATPase subunit E
V-type ATP synthase subunit E; V-ATPase subunit E {ECO:0000255|HAMAP-Rule:MF_00311}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_106_000M1_scaffold_3396_16
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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13432..14430
DNA (999bp) protein (333aa)
H+transporting two-sector ATPase C (AC39) subunit n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AID3_9CLOT
V-type ATP synthase subunit C
Tax=BJP_IG2157_Clostridiales_52_13
L3_106_000M1_scaffold_3396_17
Leptotrichia sp. oral taxon 215, Leptotrichia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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14453..14767
DNA (315bp) protein (105aa)
V-type ATP synthase subunit F n=1 Tax=Leptotrichia sp. oral taxon 215 str. W9775 RepID=U2RBW9_9FUSO
V-type ATP synthase subunit F {ECO:0000256|HAMAP-Rule:MF_00312}; V-ATPase subunit F {ECO:0000256|HAMAP-Rule:MF_00312}; TaxID=1321779 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Leptotrichia.;" source="Leptotrichia sp. oral taxon 215 str. W9775.;"
archaeal/vacuolar-type H+-ATPase subunit F
L3_106_000M1_scaffold_3396_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14812..16566
DNA (1755bp) protein (585aa)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
V-type ATP synthase alpha chain n=1 Tax=Clostridium sp. CAG:226 RepID=R5BBD4_9CLOT
ATP synthase, A subunit
L3_106_000M1_scaffold_3396_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16579..17970
DNA (1392bp) protein (464aa)
V-type ATP synthase beta chain n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4E6_9CLOT
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
H+transporting two-sector ATPase alpha/beta subunit
L3_106_000M1_scaffold_3396_20
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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17974..18612
DNA (639bp) protein (213aa)
V-type ATP synthase subunit D n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A017_MAHA5
V-type ATPase subunit D
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
Displaying 20 items

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