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L3_106_000M1_scaffold_5258

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_5258_1
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..1253
DNA (1251bp) protein (417aa)
RND transporter HAE1/HME family permease protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MVW7_9CLOT
RND transporter, HAE1/HME family, permease protein {ECO:0000313|EMBL:EDO59554.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Cation/multidrug efflux pump
L3_106_000M1_scaffold_5258_2
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1549..2367)
DNA (819bp) protein (273aa)
ABC 3 transport family protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6F4_9FIRM
ABC 3 transport family protein {ECO:0000313|EMBL:EDS12779.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
ABC-type Mn2+/Zn2+ transport systems, permease components
L3_106_000M1_scaffold_5258_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2360..3070)
DNA (711bp) protein (237aa)
ABC-type Mn/Zn transport systems, ATPase component (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=4 Tax=Clostridiales RepID=A7B730_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16279.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_106_000M1_scaffold_5258_4
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3072..4037)
DNA (966bp) protein (322aa)
ABC transporter, substrate-binding protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6F6_9FIRM
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EDS12781.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
ABC-type metal ion transport system, periplasmic component/surface adhesin
L3_106_000M1_scaffold_5258_5
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4034..4453)
DNA (420bp) protein (140aa)
Transcriptional regulator Fur family n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5UZ22_9FIRM
Transcriptional regulator Fur family {ECO:0000313|EMBL:CCZ83553.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
Fe2+/Zn2+ uptake regulation proteins
L3_106_000M1_scaffold_5258_6
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4685..5644
DNA (960bp) protein (320aa)
Glycosyltransferases involved in cell wall biogenesis (EC:3.1.26.3)
Glycosyltransferase group 2 family protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N1C3_9CLOT
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDC05798.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L3_106_000M1_scaffold_5258_7
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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5637..6860
DNA (1224bp) protein (408aa)
dpaL; diaminopropionate ammonia-lyase DpaL (EC:4.3.1.15)
Diaminopropionate ammonia-lyase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8A5_9FIRM
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:KHS56382.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
L3_106_000M1_scaffold_5258_8
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6961..7608)
DNA (648bp) protein (216aa)
Haloacid dehalogenase superfamily enzyme subfamily IA n=1 Tax=Clostridium sp. CAG:265 RepID=R6KXX9_9CLOT
HAD family hydrolase {ECO:0000313|EMBL:KEZ87061.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
hydrolase
L3_106_000M1_scaffold_5258_9
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7674..9176)
DNA (1503bp) protein (501aa)
IMP dehydrogenase/GMP reductase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BC88_9CLOT
IMP dehydrogenase/GMP reductase {ECO:0000313|EMBL:CDA61808.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
IMP dehydrogenase/GMP reductase
L3_106_000M1_scaffold_5258_10
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(9265..10449)
DNA (1185bp) protein (395aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pelosinus fermentans JBW45 RepID=I9DMW9_9FIRM
yycB; putative transporter YycB
Putative transporter YycB {ECO:0000313|EMBL:CQR55757.1}; TaxID=1073571 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
L3_106_000M1_scaffold_5258_11
unknown

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10589..10828
DNA (240bp) protein (80aa)

This feature has no annotations

L3_106_000M1_scaffold_5258_12
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10880..11497)
DNA (618bp) protein (206aa)
hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta (EC:4.2.1.32)
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type n=1 Tax=Clostridium hathewayi 12489931 RepID=N9WWX4_9CLOT
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type {ECO:0000313|EMBL:ENY92022.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
L3_106_000M1_scaffold_5258_13
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11497..11616)
DNA (120bp) protein (40aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region (EC:4.2.1.32)
Tartrate dehydratase subunit alpha n=1 Tax=Eubacterium sp. CAG:86 RepID=R5E0E5_9FIRM
Tartrate dehydratase subunit alpha {ECO:0000313|EMBL:CDF09039.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
Displaying 13 items

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