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L3_106_000M1_scaffold_5532

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_5532_1
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..836
DNA (834bp) protein (278aa)
phosphoesterase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2BE0B
Exopolyphosphatase-like protein {ECO:0000313|EMBL:EMS72991.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
phosphoesterase RecJ domain-containing protein
L3_106_000M1_scaffold_5532_2
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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849..1715
DNA (867bp) protein (289aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AEP1_9CLOT
L3_106_000M1_scaffold_5532_3
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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1727..2656
DNA (930bp) protein (310aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
Riboflavin biosynthesis protein RibF n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IKV8_9FIRM
riboflavin biosynthesis protein RibF
L3_106_000M1_scaffold_5532_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2778..3041
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=1 Tax=Clostridium botulinum BKT015925 RepID=F4A992_CLOBO
30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1443128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. DC5.;"
L3_106_000M1_scaffold_5532_5
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3213..5324
DNA (2112bp) protein (704aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BI86_9CLOT
L3_106_000M1_scaffold_5532_6
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5443..6705
DNA (1263bp) protein (421aa)
Putative Zn-dependent peptidase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M0J3_CLOCD
putative Zn-dependent peptidase
Putative Zn-dependent peptidase {ECO:0000313|EMBL:AEV68038.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_106_000M1_scaffold_5532_7
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6796..7533)
DNA (738bp) protein (246aa)
Putative transmembrane protein n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NSJ5_9FIRM
Putative transmembrane protein {ECO:0000313|EMBL:CDF15112.1}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
L3_106_000M1_scaffold_5532_8
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7550..9247)
DNA (1698bp) protein (566aa)
hypothetical protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2EB51
Uncharacterized protein {ECO:0000313|EMBL:GAE90072.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
hypothetical protein
L3_106_000M1_scaffold_5532_9
Capnocytophaga canimorsus, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(9244..9453)
DNA (210bp) protein (70aa)
XRE family transcriptional regulator n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000361445C
Uncharacterized HTH-type transcriptional regulator YozG {ECO:0000313|EMBL:CEN54493.1}; TaxID=28188 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga canimorsus.;"
HTH-type transcriptional regulator yozG
L3_106_000M1_scaffold_5532_10
unknown

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comp(9466..9918)
DNA (453bp) protein (151aa)

This feature has no annotations

L3_106_000M1_scaffold_5532_11
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10283..10777)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0MY35_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB87539.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
GCN5 family acetyltransferase
Displaying 11 items

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