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L3_106_000M1_scaffold_4628

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_4628_1
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..123
DNA (123bp) protein (41aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7ANN8_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEC58773.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_106_000M1_scaffold_4628_2
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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127..966
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GWI9_FLAPJ
Methionine sulfoxide reductase {ECO:0000313|EMBL:AKC16984.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
methionine sulfoxide reductase
L3_106_000M1_scaffold_4628_3
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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1085..1624
DNA (540bp) protein (180aa)
Acetyltransferase ribosomal protein N-acetylase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HN29_9FIRM
Acetyltransferase ribosomal protein N-acetylase {ECO:0000313|EMBL:CCY26197.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
putative acetyltransferase
L3_106_000M1_scaffold_4628_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1653..2876
DNA (1224bp) protein (408aa)
HI0933 family flavoprotein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ87_9FIRM
HI0933 family flavoprotein {ECO:0000313|EMBL:EHL63971.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted flavoproteins
L3_106_000M1_scaffold_4628_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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2873..3595
DNA (723bp) protein (241aa)
Methyltransferase, YaeB family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YU85_9FIRM
Methyltransferase, YaeB family {ECO:0000313|EMBL:EHM42678.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_106_000M1_scaffold_4628_6
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3638..4561
DNA (924bp) protein (308aa)
Transcriptional regulator, MerR family n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EEB0_9FIRM
Multidrug-efflux transporter 1 regulator {ECO:0000313|EMBL:KJJ73229.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
MerR family transcriptional regulator
L3_106_000M1_scaffold_4628_7
unknown

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4661..4798
DNA (138bp) protein (46aa)

This feature has no annotations

L3_106_000M1_scaffold_4628_8
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4926..5783)
DNA (858bp) protein (286aa)
Prenyltransferase UbiA family n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DVL2_9FIRM
Prenyltransferase UbiA family {ECO:0000313|EMBL:CDA88924.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
4-hydroxybenzoate polyprenyltransferase and related prenyltransferases
L3_106_000M1_scaffold_4628_9
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

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comp(5773..7014)
DNA (1242bp) protein (414aa)
id=4834713 bin=GWC2_Clostridiales_40_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
Tax=GWC2_Clostridiales_40_7_curated
L3_106_000M1_scaffold_4628_10
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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7145..7729
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YFV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14482.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
HAD-superfamily hydrolase
L3_106_000M1_scaffold_4628_11
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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7726..8082
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YGZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14481.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
membrane protein
L3_106_000M1_scaffold_4628_12
Bacillus coagulans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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8076..8405
DNA (330bp) protein (110aa)
multidrug transporter n=1 Tax=Bacillus coagulans RepID=UPI00036F8BB6
multidrug resistance efflux transporter EmrE
Multidrug resistance efflux transporter EmrE {ECO:0000313|EMBL:AEH52771.1}; TaxID=941639 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus coagulans (strain 2-6).;"
L3_106_000M1_scaffold_4628_13
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8414..9877)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NMV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12560.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L3_106_000M1_scaffold_4628_14
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10020..10691)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JDZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS32226.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
hypothetical protein
L3_106_000M1_scaffold_4628_15
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10970..12337)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RAY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC46073.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_106_000M1_scaffold_4628_16
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12880..13116)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D2H3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG54453.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Helix-turn-helix domain protein
L3_106_000M1_scaffold_4628_17
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13113..13454)
DNA (342bp) protein (114aa)
DNA-directed RNA polymerase specialized sigma subunit (EC:2.7.7.6)
Sigma-70, region 4 n=2 Tax=Clostridiales RepID=G9YPC3_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EHO29569.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Displaying 17 items

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