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L3_106_000M1_scaffold_3241

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_3241_1
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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183..818
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LHW1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL19422.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_106_000M1_scaffold_3241_2
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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1006..2202
DNA (1197bp) protein (399aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=2 Tax=Blautia RepID=R5C6K7_9FIRM
L3_106_000M1_scaffold_3241_3
unknown

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comp(2188..2706)
DNA (519bp) protein (173aa)

This feature has no annotations

L3_106_000M1_scaffold_3241_4
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2807..3622
DNA (816bp) protein (272aa)
Formate/nitrite transporter n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LFP3_9FIRM
Formate/nitrite transporter {ECO:0000313|EMBL:EET60628.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
formate/nitrite transporter
L3_106_000M1_scaffold_3241_5
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3706..4149)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D379_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74690.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
hypothetical protein
L3_106_000M1_scaffold_3241_6
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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4355..6400
DNA (2046bp) protein (682aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MH45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS70389.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Bacterial Ig-like domain (group 2)./Bacterial Ig-like domain (group 3).
L3_106_000M1_scaffold_3241_7
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6410..8920
DNA (2511bp) protein (837aa)
Bacterial Ig-like domain (Group 2) n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LH82_9FIRM
Bacterial Ig-like domain (group 2).
Bacterial Ig-like domain (Group 2) {ECO:0000313|EMBL:CBL19193.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_106_000M1_scaffold_3241_8
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9094..9462
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T091_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN95886.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_106_000M1_scaffold_3241_9
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

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9587..10363
DNA (777bp) protein (259aa)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAD9_9FIRM
1-(5-phosphoribosyl)-5-((5'-phosphoribosylamino)m ethylideneamino)imidazole-4-carboxamide isomerase {ECO:0000313|EMBL:CDA63741.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
L3_106_000M1_scaffold_3241_10
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10555..11082
DNA (528bp) protein (176aa)
Ribosomal subunit interface protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LIX7_9FIRM
Ribosomal subunit interface protein {ECO:0000313|EMBL:EET59516.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
SSU ribosomal protein S30P/sigma 54 modulation protein
L3_106_000M1_scaffold_3241_11
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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11214..13790
DNA (2577bp) protein (859aa)
Protein translocase subunit SecA n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6UZD6_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
protein translocase subunit secA
L3_106_000M1_scaffold_3241_12
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13982..15004
DNA (1023bp) protein (341aa)
Peptide chain release factor 2 n=2 Tax=Clostridiales RepID=R5TZE1_9FIRM
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
bacterial peptide chain release factor 2 (bRF-2)
L3_106_000M1_scaffold_3241_13
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15203..15646
DNA (444bp) protein (148aa)
UPF0735 ACT domain-containing protein BN683_01406 n=2 Tax=Clostridiales RepID=R5U5K0_9FIRM
UPF0735 ACT domain-containing protein HMPREF0373_02132 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
amino acid-binding ACT protein
L3_106_000M1_scaffold_3241_14
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

15665..16879
DNA (1215bp) protein (405aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
Homoserine dehydrogenase n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BND8_9FIRM
homoserine dehydrogenase
L3_106_000M1_scaffold_3241_15
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16922..18148
DNA (1227bp) protein (409aa)
Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CJW5_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEG49948.1}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
proposed homoserine kinase
L3_106_000M1_scaffold_3241_16
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18143..18844)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NB25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC09298.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L3_106_000M1_scaffold_3241_17
unknown

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comp(18841..19395)
DNA (555bp) protein (185aa)

This feature has no annotations

Displaying 17 items

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