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L3_106_000M1_scaffold_458

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Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_458_1
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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97..792
DNA (696bp) protein (232aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
RNAse III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Dorea sp. CAG:317 RepID=R6WP12_9FIRM
L3_106_000M1_scaffold_458_2
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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800..4360
DNA (3561bp) protein (1187aa)
Chromosome partition protein Smc n=1 Tax=Dorea sp. CAG:317 RepID=R6WBY1_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
condensin subunit Smc
L3_106_000M1_scaffold_458_3
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4374..5309
DNA (936bp) protein (312aa)
Signal recognition particle receptor FtsY n=1 Tax=Dorea sp. CAG:317 RepID=R6XQK7_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
signal recognition particle-docking protein FtsY
L3_106_000M1_scaffold_458_4
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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5344..6564
DNA (1221bp) protein (407aa)
threonine dehydratase, medium form (EC:4.3.1.19)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WX45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08581.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
L3_106_000M1_scaffold_458_5
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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6686..8140
DNA (1455bp) protein (485aa)
HMGL-like protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WGT0_9FIRM
HMGL-like protein {ECO:0000313|EMBL:CDD08580.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
2-isopropylmalate synthase
L3_106_000M1_scaffold_458_6
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8195..8845
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WP08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08579.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
transcriptional regulator, GntR family
L3_106_000M1_scaffold_458_7
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8887..10083
DNA (1197bp) protein (399aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
isocitrate dehydrogenase, NADP-dependent, eukaryotic type (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] n=1 Tax=Dorea sp. CAG:317 RepID=R6WBX7_9FIRM
L3_106_000M1_scaffold_458_8
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10156..12075)
DNA (1920bp) protein (640aa)
ABC transporter ATP-binding protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XQK3_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD08577.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_106_000M1_scaffold_458_9
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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12208..12852
DNA (645bp) protein (215aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Dorea sp. CAG:317 RepID=R6WX41_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
CoA-binding protein
L3_106_000M1_scaffold_458_10
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12935..14410
DNA (1476bp) protein (492aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WGS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08575.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region
L3_106_000M1_scaffold_458_11
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14376..15542
DNA (1167bp) protein (389aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Dorea sp. CAG:317 RepID=R6WP06_9FIRM
L3_106_000M1_scaffold_458_12
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15628..15975
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
mRNA interferase n=1 Tax=Dorea sp. CAG:317 RepID=R6WBX3_9FIRM
Growth inhibitor
L3_106_000M1_scaffold_458_13
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16000..16809
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XQJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08572.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Hemolysins and related proteins containing CBS domains
L3_106_000M1_scaffold_458_14
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16857..17588
DNA (732bp) protein (244aa)
Probable transcriptional regulatory protein BN605_01927 n=1 Tax=Dorea sp. CAG:317 RepID=R6WX40_9FIRM
Probable transcriptional regulatory protein BN605_01927 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
conserved hypothetical protein TIGR01033
L3_106_000M1_scaffold_458_15
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17610..18377
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WGS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08570.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_106_000M1_scaffold_458_16
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18390..19670
DNA (1281bp) protein (427aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WP03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08569.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
L3_106_000M1_scaffold_458_17
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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19723..20421
DNA (699bp) protein (233aa)
Putative endopeptidase Clp n=1 Tax=Dorea sp. CAG:317 RepID=R6WBW9_9FIRM
Putative endopeptidase Clp {ECO:0000313|EMBL:CDD08568.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Protease subunit of ATP-dependent Clp proteases
L3_106_000M1_scaffold_458_18
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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20486..22867
DNA (2382bp) protein (794aa)
FtsK/SpoIIIE family protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XQJ7_9FIRM
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:CDD08567.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
DNA translocase FtsK
L3_106_000M1_scaffold_458_19
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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22916..24586
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Dorea sp. CAG:317 RepID=R6WX35_9FIRM
L3_106_000M1_scaffold_458_20
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24616..25872
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WGS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08565.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Tetratricopeptide repeat.
L3_106_000M1_scaffold_458_21
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25957..26844
DNA (888bp) protein (296aa)
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.97.-.- 1.18.1.2)
Ferredoxin--NADP+ reductase subunit alpha n=1 Tax=Dorea sp. CAG:317 RepID=R6WP01_9FIRM
Ferredoxin--NADP+ reductase subunit alpha {ECO:0000313|EMBL:CDD08564.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
L3_106_000M1_scaffold_458_22
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26844..28232
DNA (1389bp) protein (463aa)
glutamate synthase (NADPH), homotetrameric (EC:1.4.1.13 1.4.1.14)
Glutamate synthase (NADPH) homotetrameric n=1 Tax=Dorea sp. CAG:317 RepID=R6WBW6_9FIRM
Glutamate synthase (NADPH) homotetrameric {ECO:0000313|EMBL:CDD08563.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
L3_106_000M1_scaffold_458_23
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28372..29145
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NA09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS80140.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
zinc/iron permease
L3_106_000M1_scaffold_458_24
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29162..31177
DNA (2016bp) protein (672aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WX34_9FIRM
L3_106_000M1_scaffold_458_25
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31178..31879
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WGR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08560.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
DNA alkylation repair enzyme
L3_106_000M1_scaffold_458_26
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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31894..32373
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Dorea sp. CAG:317 RepID=R6WNZ7_9FIRM
conserved hypothetical protein TIGR00246
L3_106_000M1_scaffold_458_27
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32389..33129
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XQI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08552.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
TraX protein.
L3_106_000M1_scaffold_458_28
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33148..33537
DNA (390bp) protein (130aa)
Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold (EC:3.1.1.3)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WX26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08551.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
L3_106_000M1_scaffold_458_29
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33568..34488
DNA (921bp) protein (307aa)
Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold (EC:3.1.1.3)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9KCP6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS41222.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
L3_106_000M1_scaffold_458_30
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

34589..34915
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NA42_9FIRM
Nucleotidyltransferase domain {ECO:0000313|EMBL:CEO89239.1}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
Nucleotidyltransferase domain.
Displaying items 1-30 of 88 in total

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