ggKbase home page

L3_106_000M1_scaffold_806

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_806_1
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(188..1273)
DNA (1086bp) protein (362aa)
aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Dorea sp. CAG:317 RepID=R6XQN9_9FIRM
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CDD08637.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
L3_106_000M1_scaffold_806_2
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1286..2665)
DNA (1380bp) protein (460aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Dorea sp. CAG:317 RepID=R6WC27_9FIRM
L3_106_000M1_scaffold_806_3
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2755..3363)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WP43_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08639.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_106_000M1_scaffold_806_4
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3500..4267
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WGX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08640.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L3_106_000M1_scaffold_806_5
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4260..5057
DNA (798bp) protein (266aa)
ABC-type nitrate/sulfonate/taurine/bicarbonate transport system protein permease components n=1 Tax=Dorea sp. CAG:317 RepID=R6WX92_9FIRM
ABC-type nitrate/sulfonate/taurine/bicarbonate transport system protein permease components {ECO:0000313|EMBL:CDD08641.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L3_106_000M1_scaffold_806_6
Fretibacterium fastidiosum, Fretibacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

5205..6338
DNA (1134bp) protein (378aa)
amidohydrolase (EC:3.5.1.14)
Amidohydrolase {ECO:0000313|EMBL:CBL27768.1}; EC=3.5.1.14 {ECO:0000313|EMBL:CBL27768.1};; TaxID=651822 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Fretibacterium.;" source="Fretibacterium fastidiosum.;"
Amidohydrolase n=1 Tax=Fretibacterium fastidiosum RepID=D4M7C3_9BACT
L3_106_000M1_scaffold_806_7
Fretibacterium fastidiosum, Fretibacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

6360..6629
DNA (270bp) protein (90aa)
Preprotein translocase, YajC subunit n=1 Tax=Fretibacterium fastidiosum RepID=D4M7C1_9BACT
preprotein translocase, YajC subunit
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:CBL27766.1}; TaxID=651822 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Fretibacterium.;" source="Fretibacterium fastidiosum.;"
L3_106_000M1_scaffold_806_8
unknown

Not on your lists

7029..7196
DNA (168bp) protein (56aa)

This feature has no annotations

L3_106_000M1_scaffold_806_9
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7193..9031
DNA (1839bp) protein (613aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A301_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ22576.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
site-specific DNA recombinase
L3_106_000M1_scaffold_806_10
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9236..9937
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AJ92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87400.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
hypothetical protein
L3_106_000M1_scaffold_806_11
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9924..10334
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AJ91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87399.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
hypothetical protein
L3_106_000M1_scaffold_806_12
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10525..11412)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XQP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08642.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Small-conductance mechanosensitive channel
L3_106_000M1_scaffold_806_13
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11413..12261)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WC31_9FIRM
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
conserved hypothetical protein TIGR00726
L3_106_000M1_scaffold_806_14
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12271..12630)
DNA (360bp) protein (120aa)
UPF0102 protein BN605_02000 n=1 Tax=Dorea sp. CAG:317 RepID=R6WP47_9FIRM
UPF0102 protein BN605_02000 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
conserved hypothetical protein TIGR00252
L3_106_000M1_scaffold_806_15
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12687..13361)
DNA (675bp) protein (225aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Dorea sp. CAG:317 RepID=R6WGX7_9FIRM
L3_106_000M1_scaffold_806_16
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13354..13920)
DNA (567bp) protein (189aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Dorea sp. 5-2 RepID=R9NAX2_9FIRM
L3_106_000M1_scaffold_806_17
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13957..14805)
DNA (849bp) protein (283aa)
Ribosome biogenesis GTPase A n=1 Tax=Dorea sp. CAG:317 RepID=R6WHZ9_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
ribosome biogenesis GTP-binding protein YlqF
L3_106_000M1_scaffold_806_18
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14811..15401)
DNA (591bp) protein (197aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Signal peptidase I n=1 Tax=Dorea sp. CAG:317 RepID=R6WAP3_9FIRM
signal peptidase I
L3_106_000M1_scaffold_806_19
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15467..15814)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1 Tax=Dorea sp. CAG:317 RepID=R6WR71_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
ribosomal protein L19, bacterial type
L3_106_000M1_scaffold_806_20
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15903..16646)
DNA (744bp) protein (248aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Dorea sp. CAG:317 RepID=R6XJD1_9FIRM
L3_106_000M1_scaffold_806_21
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16659..17165)
DNA (507bp) protein (169aa)
Ribosome maturation factor RimM n=1 Tax=Dorea sp. CAG:317 RepID=R6W5S6_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
16S rRNA processing protein RimM
L3_106_000M1_scaffold_806_22
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17232..17462)
DNA (231bp) protein (77aa)
UPF0109 protein BN605_02007 n=1 Tax=Dorea sp. CAG:317 RepID=R6WI03_9FIRM
UPF0109 protein BN605_02007 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
RNA-binding protein (KH domain)
L3_106_000M1_scaffold_806_23
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17486..17731)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=1 Tax=Dorea sp. CAG:317 RepID=R6WAP9_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
SSU ribosomal protein S16P
L3_106_000M1_scaffold_806_24
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17816..19171)
DNA (1356bp) protein (452aa)
Signal recognition particle protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WR78_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
signal recognition particle protein
L3_106_000M1_scaffold_806_25
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19173..19523)
DNA (351bp) protein (117aa)
UPF0122 protein BN605_02010 n=1 Tax=Dorea sp. CAG:317 RepID=R6XJD7_9FIRM
UPF0122 protein BN605_02010 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_106_000M1_scaffold_806_26
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19604..20482)
DNA (879bp) protein (293aa)
Peptidase S8/S53 family n=1 Tax=Dorea sp. CAG:317 RepID=R6W5T1_9FIRM
Peptidase S8/S53 family {ECO:0000313|EMBL:CDD06458.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Subtilisin-like serine proteases
L3_106_000M1_scaffold_806_27
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20650..21282
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WI08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD06459.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L3_106_000M1_scaffold_806_28
unknown

Not on your lists

21366..21569
DNA (204bp) protein (68aa)

This feature has no annotations

L3_106_000M1_scaffold_806_29
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21618..21782)
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WAQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD06460.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_106_000M1_scaffold_806_30
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21912..22469
DNA (558bp) protein (186aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NCY0_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS07498.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Displaying items 1-30 of 69 in total

View Taxonomy