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L3_106_000M1_scaffold_1501

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1501_1
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..780
DNA (780bp) protein (260aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LZJ1_9FIRM
DNA-directed RNA polymerase subunit beta
L3_106_000M1_scaffold_1501_2
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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793..4362
DNA (3570bp) protein (1190aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P911_9FIRM
L3_106_000M1_scaffold_1501_3
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4642..5070
DNA (429bp) protein (143aa)
30S ribosomal protein S12 n=3 Tax=root RepID=R6BGK7_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
SSU ribosomal protein S12P
L3_106_000M1_scaffold_1501_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5209..5679
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=2 Tax=root RepID=R5DS85_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
SSU ribosomal protein S7P
L3_106_000M1_scaffold_1501_5
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5764..7845
DNA (2082bp) protein (694aa)
Elongation factor G n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P915_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
fusA; Elongation factor G
L3_106_000M1_scaffold_1501_6
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7956..9155
DNA (1200bp) protein (400aa)
tuf; translation elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LZJ6_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
L3_106_000M1_scaffold_1501_7
unknown

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9247..9624
DNA (378bp) protein (126aa)

This feature has no annotations

L3_106_000M1_scaffold_1501_8
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9718..10908)
DNA (1191bp) protein (397aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
S-adenosylmethionine synthase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P919_9FIRM
S-adenosylmethionine synthase
L3_106_000M1_scaffold_1501_9
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11266..11883)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BU61_9CLOT
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
conserved membrane protein of unknown function
L3_106_000M1_scaffold_1501_10
unknown

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12289..12591
DNA (303bp) protein (101aa)

This feature has no annotations

L3_106_000M1_scaffold_1501_11
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12628..14841
DNA (2214bp) protein (738aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
helicase, RecD/TraA family (EC:3.1.11.5)
RecD/TraA family helicase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LFF1_9FIRM
L3_106_000M1_scaffold_1501_12
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14841..15512
DNA (672bp) protein (224aa)
ComF family protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CJR8_9FIRM
ComF family protein {ECO:0000313|EMBL:CDA71776.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein
L3_106_000M1_scaffold_1501_13
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15638..16645
DNA (1008bp) protein (336aa)
MreB/Mrl family cell shape determining protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LNZ7_9FIRM
MreB/Mrl family cell shape determining protein {ECO:0000313|EMBL:EOS57452.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
cell shape determining protein, MreB/Mrl family
L3_106_000M1_scaffold_1501_14
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16890..18752
DNA (1863bp) protein (621aa)
hypothetical protein n=1 Tax=Clostridiaceae bacterium JC13 RepID=UPI00031BFB0A
FAD binding domain protein {ECO:0000313|EMBL:CDE51602.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
L3_106_000M1_scaffold_1501_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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18911..19579
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036D4CB7
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EFB74485.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hydrolase
L3_106_000M1_scaffold_1501_16
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19639..20448)
DNA (810bp) protein (270aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P928_9FIRM
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EDS12054.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
small-conductance mechanosensitive channel
L3_106_000M1_scaffold_1501_17
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20655..23063
DNA (2409bp) protein (803aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
Putative ATP-dependent DNA helicase PcrA n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P934_9FIRM
L3_106_000M1_scaffold_1501_18
unknown

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23088..23273
DNA (186bp) protein (62aa)

This feature has no annotations

L3_106_000M1_scaffold_1501_19
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23434..24336
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6D5D0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA79371.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L3_106_000M1_scaffold_1501_20
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24431..25222
DNA (792bp) protein (264aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Thymidylate synthase ThyX n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCL7_9CLOT
thymidylate synthase, flavin-dependent
L3_106_000M1_scaffold_1501_21
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25206..25916
DNA (711bp) protein (237aa)
thymidylate kinase (EC:2.7.4.9)
dTMP kinase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BM07_9CLOT
dTMP kinase {ECO:0000313|EMBL:CDA61949.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
L3_106_000M1_scaffold_1501_22
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26012..26620
DNA (609bp) protein (203aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P946_9FIRM
L3_106_000M1_scaffold_1501_23
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26661..27746
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M3P9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65610.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_106_000M1_scaffold_1501_24
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27773..28996
DNA (1224bp) protein (408aa)
Collagenase and related proteases (EC:3.4.-.-)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CVB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA79535.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
L3_106_000M1_scaffold_1501_25
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29293..30165
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BV31_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA62986.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
L3_106_000M1_scaffold_1501_26
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30557..31054
DNA (498bp) protein (166aa)
Protein MraZ n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFG5_9FIRM
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
MraZ protein
L3_106_000M1_scaffold_1501_27
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31073..31999
DNA (927bp) protein (309aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Clostridium sp. CAG:169 RepID=R6C797_9CLOT
S-adenosyl-methyltransferase MraW
L3_106_000M1_scaffold_1501_28
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32053..32553
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Anaerotruncus sp. G3(2012) RepID=R9LSJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61538.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
putative membrane protein
L3_106_000M1_scaffold_1501_29
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32666..34900
DNA (2235bp) protein (745aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFG2_9FIRM
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EDS10095.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_106_000M1_scaffold_1501_30
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34932..36395
DNA (1464bp) protein (488aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LRX7_9FIRM
Displaying items 1-30 of 33 in total

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