ggKbase home page

L3_106_000M1_scaffold_1540

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1540_1
unknown

Not on your lists

comp(1..900)
DNA (900bp) protein (300aa)

This feature has no annotations

L3_106_000M1_scaffold_1540_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1240..2355)
DNA (1116bp) protein (372aa)
Aldo/keto reductase family protein n=1 Tax=Clostridium difficile CD160 RepID=T3D6R2_CLODI
Aldo/keto reductase family protein {ECO:0000313|EMBL:EQF23143.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
oxidoreductase
L3_106_000M1_scaffold_1540_3
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2503..3987)
DNA (1485bp) protein (495aa)
UPF0371 protein C814_00308 n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9MA82_9FIRM
UPF0371 protein C814_00308 {ECO:0000256|HAMAP-Rule:MF_01567}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_106_000M1_scaffold_1540_4
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4241..5314
DNA (1074bp) protein (358aa)
Stage II sporulation protein D n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ0_9FIRM
Stage II sporulation protein D {ECO:0000313|EMBL:EDS09238.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
stage II sporulation protein D
L3_106_000M1_scaffold_1540_5
unknown

Not on your lists

comp(5411..5770)
DNA (360bp) protein (120aa)

This feature has no annotations

L3_106_000M1_scaffold_1540_6
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5767..7071)
DNA (1305bp) protein (435aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
PAS domain S-box protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NPY9_9FIRM
multi-sensor signal transduction histidine kinase
L3_106_000M1_scaffold_1540_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7091..7777)
DNA (687bp) protein (229aa)
Response regulator receiver domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MNE2_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDS00868.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
two component transcriptional regulator, winged helix family
L3_106_000M1_scaffold_1540_8
unknown

Not on your lists

comp(7779..8294)
DNA (516bp) protein (172aa)

This feature has no annotations

L3_106_000M1_scaffold_1540_9
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8298..8954)
DNA (657bp) protein (219aa)
putative phosphatase (EC:3.1.3.18)
HAD hydrolase family IA variant 1 n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C9M5_9FIRM
HAD hydrolase family IA variant 1 {ECO:0000313|EMBL:CDA72310.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
L3_106_000M1_scaffold_1540_10
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8981..9706)
DNA (726bp) protein (242aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCC2_9CLOT
L3_106_000M1_scaffold_1540_11
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9711..10634)
DNA (924bp) protein (308aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA00_9CLOT
L3_106_000M1_scaffold_1540_12
unknown

Not on your lists

10781..11362
DNA (582bp) protein (194aa)

This feature has no annotations

L3_106_000M1_scaffold_1540_13
unknown

Not on your lists

11468..12142
DNA (675bp) protein (225aa)

This feature has no annotations

L3_106_000M1_scaffold_1540_14
unknown

Not on your lists

12168..12866
DNA (699bp) protein (233aa)

This feature has no annotations

L3_106_000M1_scaffold_1540_15
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12941..14110)
DNA (1170bp) protein (390aa)
Chaperone protein DnaJ n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7T0_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
chaperone protein DnaJ
L3_106_000M1_scaffold_1540_16
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14311..16158)
DNA (1848bp) protein (616aa)
Chaperone protein DnaK n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7S9_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
chaperone protein DnaK
L3_106_000M1_scaffold_1540_17
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16217..16783)
DNA (567bp) protein (189aa)
Protein GrpE n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7S8_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
GrpE protein
L3_106_000M1_scaffold_1540_18
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16808..17836)
DNA (1029bp) protein (343aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M3Z3_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
heat-inducible transcription repressor HrcA
L3_106_000M1_scaffold_1540_19
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18084..18455)
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFZ4_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
50S ribosomal protein L7/L12
L3_106_000M1_scaffold_1540_20
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18506..19015)
DNA (510bp) protein (170aa)
50S ribosomal protein L10 n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LJN3_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
rplJ; ribosomal protein L10
L3_106_000M1_scaffold_1540_21
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(19241..19855)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Fusobacterium ulcerans 12-1B RepID=H1PSF8_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:EHO82107.1}; TaxID=457404 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans 12-1B.;"
nitroreductase
L3_106_000M1_scaffold_1540_22
unknown

Not on your lists

comp(19946..20392)
DNA (447bp) protein (149aa)

This feature has no annotations

L3_106_000M1_scaffold_1540_23
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20561..21277)
DNA (717bp) protein (239aa)
50S ribosomal protein L1 n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWG8_9CLOT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
50S ribosomal protein L1
L3_106_000M1_scaffold_1540_24
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21343..21768)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBE1_9CLOT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
50S ribosomal protein L11
L3_106_000M1_scaffold_1540_25
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21916..22437)
DNA (522bp) protein (174aa)
Transcription termination/antitermination protein NusG n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LC83_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
NusG antitermination factor
L3_106_000M1_scaffold_1540_26
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22517..22747)
DNA (231bp) protein (77aa)
Protein translocase subunit SecE n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG00_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
preprotein translocase, SecE subunit, bacterial
L3_106_000M1_scaffold_1540_27
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22766..22915)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4F7_9FIRM
hypothetical protein
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_106_000M1_scaffold_1540_28
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23321..24388
DNA (1068bp) protein (356aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
ddl; D-alanine-D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LV36_9FIRM
L3_106_000M1_scaffold_1540_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24411..25241
DNA (831bp) protein (277aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPX7_9FIRM
L3_106_000M1_scaffold_1540_30
unknown

Not on your lists

25238..25666
DNA (429bp) protein (143aa)

This feature has no annotations

Displaying items 1-30 of 43 in total

View Taxonomy