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L3_106_000M1_scaffold_2184

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2184_1
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(172..1098)
DNA (927bp) protein (309aa)
ParB-like partition protein n=2 Tax=Clostridium bolteae RepID=R0A421_9CLOT
ParB-like partition protein {ECO:0000313|EMBL:ENZ46776.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
ParB-like partition proteins
L3_106_000M1_scaffold_2184_2
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1123..1914)
DNA (792bp) protein (264aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=3 Tax=Clostridiales RepID=D3ACH3_9CLOT
Chromosome partitioning protein {ECO:0000313|EMBL:EGN48105.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
ATPases involved in chromosome partitioning
L3_106_000M1_scaffold_2184_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1995..2945)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CM201 RepID=N9X3Q2_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL01685.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_106_000M1_scaffold_2184_4
unknown

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comp(3048..3254)
DNA (207bp) protein (69aa)

This feature has no annotations

L3_106_000M1_scaffold_2184_5
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3409..4164)
DNA (756bp) protein (252aa)
Sortase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LEJ5_9FIRM
Sortase {ECO:0000313|EMBL:EOS56988.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_106_000M1_scaffold_2184_6
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4183..5295)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LDX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS56989.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_106_000M1_scaffold_2184_7
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5653..6654
DNA (1002bp) protein (334aa)
Tyrosine recombinase XerC n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PB36_9FIRM
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
integrase family protein
L3_106_000M1_scaffold_2184_8
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7443..8456
DNA (1014bp) protein (338aa)
Tyrosine recombinase XerC n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F5N2_CLOS4
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
integrase family protein
L3_106_000M1_scaffold_2184_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8458..9108)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9L941_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO06047.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_106_000M1_scaffold_2184_10
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9239..10615)
DNA (1377bp) protein (459aa)
conserved hypothetical protein (EC:2.1.1.-)
SCIFF radical SAM maturase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9L9Q3_9FIRM
SCIFF radical SAM maturase {ECO:0000313|EMBL:EOS55288.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
L3_106_000M1_scaffold_2184_11
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10704..10850)
DNA (147bp) protein (49aa)
RSAM-modified six-cysteine peptide n=1 Tax=Clostridium sp. CAG:557 RepID=R6GIE7_9CLOT
RSAM-modified six-cysteine peptide {ECO:0000313|EMBL:CDB24200.1}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
hypothetical protein
L3_106_000M1_scaffold_2184_12
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10926..11333)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035F49F1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24197.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_106_000M1_scaffold_2184_13
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11422..11739)
DNA (318bp) protein (106aa)
Preprotein translocase YajC subunit n=1 Tax=Clostridium sp. CAG:242 RepID=R6CXT0_9CLOT
Preprotein translocase YajC subunit {ECO:0000313|EMBL:CDA77689.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
preprotein translocase subunit YajC
L3_106_000M1_scaffold_2184_14
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11847..12977)
DNA (1131bp) protein (377aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BD50_9CLOT
L3_106_000M1_scaffold_2184_15
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12980..14026)
DNA (1047bp) protein (349aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC:2.4.99.17)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BPZ8_9CLOT
L3_106_000M1_scaffold_2184_16
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14320..15354
DNA (1035bp) protein (345aa)
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Clostridium sp. CAG:242 RepID=R6DIJ2_9CLOT
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CDA77692.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
L3_106_000M1_scaffold_2184_17
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15521..16747)
DNA (1227bp) protein (409aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
Tyrosine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QG78_9FIRM
tyrosyl-tRNA synthetase
L3_106_000M1_scaffold_2184_18
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17062..18735)
DNA (1674bp) protein (558aa)
DNA repair protein RecN n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBC5_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
DNA repair protein RecN
L3_106_000M1_scaffold_2184_19
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18749..19204)
DNA (456bp) protein (152aa)
Arginine repressor n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBC6_9FIRM
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
arginine repressor ArgR
L3_106_000M1_scaffold_2184_20
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19209..20090)
DNA (882bp) protein (294aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=2 Tax=Anaerotruncus sp. G3(2012) RepID=R9M110_9FIRM
hypothetical protein
L3_106_000M1_scaffold_2184_21
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20110..20913)
DNA (804bp) protein (268aa)
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q684_9FIRM
Ribosomal RNA large subunit methyltransferase J {ECO:0000313|EMBL:CDC32228.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
hemolysin TlyA family protein
L3_106_000M1_scaffold_2184_22
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20910..22772)
DNA (1863bp) protein (621aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00021618}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LS15_9FIRM
L3_106_000M1_scaffold_2184_23
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22797..23300)
DNA (504bp) protein (168aa)
Divergent PAP2 family n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBD0_9FIRM
Divergent PAP2 family {ECO:0000313|EMBL:EDS11460.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_106_000M1_scaffold_2184_24
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23317..24192)
DNA (876bp) protein (292aa)
GGPPS1; Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic (EC:2.5.1.-)
Polyprenyl synthetase n=1 Tax=Clostridium sp. CAG:242 RepID=R6CSA2_9CLOT
Polyprenyl synthetase {ECO:0000313|EMBL:CDA75679.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
L3_106_000M1_scaffold_2184_25
unknown

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comp(24185..24397)
DNA (213bp) protein (71aa)

This feature has no annotations

L3_106_000M1_scaffold_2184_26
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24375..25604)
DNA (1230bp) protein (410aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Clostridium sp. CAG:352 RepID=R6RXK4_9CLOT
exodeoxyribonuclease VII large subunit
L3_106_000M1_scaffold_2184_27
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25601..26539)
DNA (939bp) protein (313aa)
Peptidase M22 glycoprotease n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U5K1_ETHHY
peptidase M22 glycoprotease
Peptidase M22 glycoprotease {ECO:0000313|EMBL:ADU26760.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L3_106_000M1_scaffold_2184_28
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26543..26953)
DNA (411bp) protein (137aa)
N utilization substance protein B homolog n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LRY5_9FIRM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
NusB antitermination factor
L3_106_000M1_scaffold_2184_29
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27052..27432)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS11466.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_106_000M1_scaffold_2184_30
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27686..28246)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LSL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61568.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
Displaying items 1-30 of 31 in total

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