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L3_106_000M1_scaffold_1739

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1739_1
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..3195)
DNA (3195bp) protein (1065aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
mfd; Transcription-repair-coupling factor (EC:3.6.4.-)
transcription-repair coupling factor n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003812FF8
L3_106_000M1_scaffold_1739_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3448..4062)
DNA (615bp) protein (205aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
peptidyl-tRNA hydrolase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037AF1B7
L3_106_000M1_scaffold_1739_3
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4372..5328)
DNA (957bp) protein (319aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N5R9_9CLOT
L3_106_000M1_scaffold_1739_4
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5383..6420)
DNA (1038bp) protein (346aa)
Cytidylyltransferase {ECO:0000313|EMBL:EJF42111.1}; EC=2.7.7.- {ECO:0000313|EMBL:EJF42111.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Cytidylyltransferase n=1 Tax=Clostridium sp. MSTE9 RepID=J0X0M6_9CLOT
UDP-N-acetylglucosamine pyrophosphorylase
L3_106_000M1_scaffold_1739_5
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6759..9386
DNA (2628bp) protein (876aa)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EDS09607.1}; EC=2.7.9.1 {ECO:0000313|EMBL:EDS09607.1};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
ppdK; pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG19_9FIRM
L3_106_000M1_scaffold_1739_6
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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9712..9945
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DT83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA90840.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
hypothetical protein predicted by Glimmer/Critica
L3_106_000M1_scaffold_1739_7
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10667..11311)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HCD1_9FIRM
Putative sporulation protein YtaF {ECO:0000313|EMBL:KIE44777.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
hypothetical protein
L3_106_000M1_scaffold_1739_8
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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11576..12088
DNA (513bp) protein (171aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
Ferritin n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LX63_9FIRM
Ferritin-like protein
L3_106_000M1_scaffold_1739_9
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(12171..12968)
DNA (798bp) protein (266aa)
Cof-like hydrolase n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SRJ9_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EFP59847.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
HAD-superfamily hydrolase, subfamily IIB
L3_106_000M1_scaffold_1739_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13195..14241
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000376E430
CAAX protease self-immunity {ECO:0000313|EMBL:EJF41521.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
putative membrane protein
L3_106_000M1_scaffold_1739_11
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14285..14740
DNA (456bp) protein (152aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Cytidine and deoxycytidylate deaminase zinc-binding region n=2 Tax=Clostridium RepID=A7VNC5_9CLOT
CMP/dCMP deaminase zinc-binding protein
L3_106_000M1_scaffold_1739_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14915..15706)
DNA (792bp) protein (264aa)
Cof-like hydrolase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N5P9_9CLOT
Cof-like hydrolase {ECO:0000313|EMBL:EJF42144.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
HAD-superfamily hydrolase, subfamily IIB
L3_106_000M1_scaffold_1739_13
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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comp(15699..15917)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QVA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC25877.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
transcriptional regulator, XRE family
L3_106_000M1_scaffold_1739_14

Not on your lists

16255..16965
DNA (711bp) protein (237aa)
hemagglutinin n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037C57DB
Uncharacterized protein {ECO:0000313|EMBL:KKK60385.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
YadA domain-containing protein
L3_106_000M1_scaffold_1739_15
unknown

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comp(17165..17335)
DNA (171bp) protein (57aa)

This feature has no annotations

L3_106_000M1_scaffold_1739_16
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17360..18418)
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000367DFC2
Stage II sporulation protein P {ECO:0000313|EMBL:EJF42158.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
stage II sporulation protein P
L3_106_000M1_scaffold_1739_17
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18604..19419)
DNA (816bp) protein (272aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
spore protease (EC:3.4.24.78)
Germination protease n=1 Tax=Clostridium sp. MSTE9 RepID=J0X0M2_9CLOT
L3_106_000M1_scaffold_1739_18
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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19539..19802
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YEI6_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
SSU ribosomal protein S20P
L3_106_000M1_scaffold_1739_19
unknown

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20031..20486
DNA (456bp) protein (152aa)

This feature has no annotations

L3_106_000M1_scaffold_1739_20
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20389..20745)
DNA (357bp) protein (119aa)
stage V sporulation protein AEB n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003640AE8
Stage V sporulation protein AE {ECO:0000313|EMBL:EJF42169.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
stage V sporulation protein AE
L3_106_000M1_scaffold_1739_21
unknown

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20978..21478
DNA (501bp) protein (167aa)

This feature has no annotations

L3_106_000M1_scaffold_1739_22
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21684..23492
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
GTP-binding protein LepA n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035CDB8E
lepA; GTP-binding protein lepA
L3_106_000M1_scaffold_1739_23
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23485..24603
DNA (1119bp) protein (373aa)
Putative coproporphyrinogen dehydrogenase {ECO:0000313|EMBL:EJF39035.1}; EC=1.3.99.22 {ECO:0000313|EMBL:EJF39035.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Putative coproporphyrinogen dehydrogenase n=1 Tax=Clostridium sp. MSTE9 RepID=J1H0U1_9CLOT
oxygen-independent coproporphyrinogen III oxidase
L3_106_000M1_scaffold_1739_24
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24899..25930
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003671349
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
heat shock gene repressor HrcA
L3_106_000M1_scaffold_1739_25
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25982..26578
DNA (597bp) protein (199aa)
Protein GrpE n=1 Tax=Clostridium sp. MSTE9 RepID=J0WSM2_9CLOT
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
grpE; protein GrpE
L3_106_000M1_scaffold_1739_26
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26657..28504
DNA (1848bp) protein (616aa)
molecular chaperone DnaK n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035D2E15
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
chaperone protein DnaK
L3_106_000M1_scaffold_1739_27
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28758..29912
DNA (1155bp) protein (385aa)
Chaperone protein DnaJ n=1 Tax=Clostridium leptum CAG:27 RepID=R6N860_9CLOT
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
chaperone protein DnaJ
L3_106_000M1_scaffold_1739_28
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30045..30281)
DNA (237bp) protein (79aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VY66_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDO59494.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
transcriptional regulator
L3_106_000M1_scaffold_1739_29
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30397..30600
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A3A2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37515.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Cro/CI family transcriptional regulator -like protein
L3_106_000M1_scaffold_1739_30
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30836..31528
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VSD9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO61970.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
Displaying items 1-30 of 33 in total

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