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L3_106_000M1_scaffold_2081

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2081_1
Paenibacillus sp. oral taxon 786, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1..1182)
DNA (1182bp) protein (394aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=621372 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. oral taxon 786 str. D14.;"
hypothetical protein n=1 Tax=Cohnella laeviribosi RepID=UPI000360EEEC
alpha amylase
L3_106_000M1_scaffold_2081_2
unknown

Not on your lists

comp(1210..1464)
DNA (255bp) protein (85aa)

This feature has no annotations

L3_106_000M1_scaffold_2081_3
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

comp(1448..3139)
DNA (1692bp) protein (564aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GWP7_9FIRM
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:CCY21638.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
hypothetical protein
L3_106_000M1_scaffold_2081_4
Paenibacillus sp. FSL H7-0737, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3304..4812
DNA (1509bp) protein (503aa)
Two component transcriptional regulator, AraC family n=1 Tax=Clostridium sp. DL-VIII RepID=G7M777_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ21669.1}; TaxID=1536775 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H7-0737.;"
L3_106_000M1_scaffold_2081_5
Paenibacillus dendritiformis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4814..6553
DNA (1740bp) protein (580aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1131935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus dendritiformis C454.;"
Two-component system sensor histidine kinase YesM n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3S995_9BACL
two-component system sensor histidine kinase YesM
L3_106_000M1_scaffold_2081_6
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6538..7245)
DNA (708bp) protein (236aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014917};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KLD2_9FIRM
Hypothetical protein
L3_106_000M1_scaffold_2081_7
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7342..8358)
DNA (1017bp) protein (339aa)
Electron transfer flavoprotein FAD-binding domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHX2_9FIRM
Electron transfer flavoprotein FAD-binding domain protein {ECO:0000313|EMBL:EDS09090.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_106_000M1_scaffold_2081_8
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8408..9190)
DNA (783bp) protein (261aa)
Electron transfer flavoprotein domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHX3_9FIRM
Electron transfer flavoprotein domain protein {ECO:0000313|EMBL:EDS09091.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_106_000M1_scaffold_2081_9
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9220..10359)
DNA (1140bp) protein (380aa)
Acyl-CoA dehydrogenase, C-terminal domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHX4_9FIRM
Acyl-CoA dehydrogenase, C-terminal domain protein {ECO:0000313|EMBL:EDS09092.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_106_000M1_scaffold_2081_10
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10399..11238)
DNA (840bp) protein (280aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.157 1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase NAD binding domain protein n=1 Tax=Clostridium sp. CAG:411 RepID=R7HYZ6_9CLOT
3-hydroxyacyl-CoA dehydrogenase NAD binding domain protein {ECO:0000313|EMBL:CDE44919.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
L3_106_000M1_scaffold_2081_11
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11330..12106)
DNA (777bp) protein (259aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHX6_9FIRM
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:EDS09094.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
3-hydroxybutyryl-CoA dehydratase
L3_106_000M1_scaffold_2081_12
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12127..13314)
DNA (1188bp) protein (396aa)
Acetyl-CoA acetyltransferase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T031_ROSHA
acetyl-CoA acetyltransferase
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AEN95675.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_106_000M1_scaffold_2081_13
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13938..14951
DNA (1014bp) protein (338aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
aspartate/ammonia ligase (EC:6.3.1.1)
Aspartate--ammonia ligase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PAD6_9FIRM
L3_106_000M1_scaffold_2081_14
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15012..16934)
DNA (1923bp) protein (641aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
1,4-alpha-glucan branching enzyme n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z0R0_CLOBU
Carbohydrate-Binding Module Family 48 protein / Glycoside Hydrolase Family 13 protein
L3_106_000M1_scaffold_2081_15
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17634..18311
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M8N9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67350.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_106_000M1_scaffold_2081_16
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18343..19014
DNA (672bp) protein (224aa)
membrane protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002DD8A8A
Membrane protein {ECO:0000313|EMBL:EWM53008.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein
L3_106_000M1_scaffold_2081_17
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19025..20278
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IWB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS26111.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
CotH protein
L3_106_000M1_scaffold_2081_18
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20236..20778)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C7N9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE14577.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_106_000M1_scaffold_2081_19
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20805..21410)
DNA (606bp) protein (202aa)
Translocator protein, LysE family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDB5_9CLOT
Translocator protein, LysE family {ECO:0000313|EMBL:EEG30501.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
lysine exporter protein LysE/YggA
L3_106_000M1_scaffold_2081_20
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21466..22332)
DNA (867bp) protein (289aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4C7P1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY86373.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
Protein of unknown function (DUF3737).
L3_106_000M1_scaffold_2081_21
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22353..22601)
DNA (249bp) protein (83aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4C7P2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY86374.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L3_106_000M1_scaffold_2081_22
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22603..23184)
DNA (582bp) protein (194aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4C7P3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY86375.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_106_000M1_scaffold_2081_23
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23230..24000)
DNA (771bp) protein (257aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4U5_9CLOT
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EEG72713.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
short-chain alcohol dehydrogenase-like protein
L3_106_000M1_scaffold_2081_24
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24120..26471)
DNA (2352bp) protein (784aa)
Efflux ABC transporter, permease protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C7P4_9CLOT
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EFE14582.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
ABC-type transport system, involved in lipoprotein release, permease component
L3_106_000M1_scaffold_2081_25
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26485..27240)
DNA (756bp) protein (252aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=D4C7P5_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE14583.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_106_000M1_scaffold_2081_26
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27237..28604)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C7P6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE14584.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
PaaK; coenzyme F390 synthetase
L3_106_000M1_scaffold_2081_27
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28623..29759)
DNA (1137bp) protein (379aa)
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase n=1 Tax=Clostridium sp. CAG:149 RepID=R5M9U6_9CLOT
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase {ECO:0000313|EMBL:CCY86379.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hydrolase domain-containing protein
Displaying 27 items

View Taxonomy