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L3_106_000M1_scaffold_2165

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2165_1
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..543
DNA (543bp) protein (181aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Beta-N-acetylhexosaminidase (EC:3.2.1.52)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000366EBBD
L3_106_000M1_scaffold_2165_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

544..981
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037106C8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJF41568.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_106_000M1_scaffold_2165_3
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1194..1934)
DNA (741bp) protein (247aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N2K9_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EJF41024.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
helix-turn-helix domain-containing protein
L3_106_000M1_scaffold_2165_4
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2293..3027
DNA (735bp) protein (245aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73 5.4.2.1)
histidine phosphatase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000381F076
Histidine phosphatase superfamily (Branch 1) {ECO:0000313|EMBL:EJF41012.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_106_000M1_scaffold_2165_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3345..5057
DNA (1713bp) protein (571aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
2-isopropylmalate synthase, yeast type (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Clostridium sp. MSTE9 RepID=J1H605_9CLOT
L3_106_000M1_scaffold_2165_6
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5238..6311
DNA (1074bp) protein (358aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Clostridium sp. CAG:352 RepID=R6R148_9CLOT
L3_106_000M1_scaffold_2165_7
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6308..7081
DNA (774bp) protein (258aa)
AzlC protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N5A4_9CLOT
AzlC protein {ECO:0000313|EMBL:EDO60937.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
branched-chain amino acid transporter
L3_106_000M1_scaffold_2165_8
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7078..7425
DNA (348bp) protein (116aa)
Branched-chain amino acid transport protein (AzlD) n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD8_9CLOT
Branched-chain amino acid transport protein (AzlD) {ECO:0000313|EMBL:EDO60938.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_106_000M1_scaffold_2165_9
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7480..7968)
DNA (489bp) protein (163aa)
cytidine deaminase n=1 Tax=Clostridium botulinum RepID=UPI0002DC1A1A
deoxycytidylate deaminase
Putative zinc-binding protein {ECO:0000313|EMBL:CDH89425.1}; dCMP deaminase {ECO:0000313|EMBL:ACD23058.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_106_000M1_scaffold_2165_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8252..9118
DNA (867bp) protein (289aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
dimethyladenosine transferase (EC:2.1.1.-)
dimethyladenosine transferase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000382CC54
L3_106_000M1_scaffold_2165_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9133..9477
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0MXW8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF39234.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_106_000M1_scaffold_2165_12
unknown

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9474..9605
DNA (132bp) protein (44aa)

This feature has no annotations

L3_106_000M1_scaffold_2165_13
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9602..10828)
DNA (1227bp) protein (409aa)
Homocysteine S-methyltransferase n=1 Tax=Clostridium leptum CAG:27 RepID=R6N018_9CLOT
Homocysteine S-methyltransferase {ECO:0000313|EMBL:CDC04380.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_106_000M1_scaffold_2165_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10866..12560)
DNA (1695bp) protein (565aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
argS; Arginine-tRNA ligase (EC:6.1.1.19)
arginyl-tRNA synthetase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035D14CA
L3_106_000M1_scaffold_2165_15
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12529..12990)
DNA (462bp) protein (154aa)
PF09148 domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H957_9CLOT
PF09148 domain protein {ECO:0000313|EMBL:EJF42155.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_106_000M1_scaffold_2165_16
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13014..13826)
DNA (813bp) protein (271aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Clostridium sp. CAG:557 RepID=R6GFY4_9CLOT
L3_106_000M1_scaffold_2165_17
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13851..14918)
DNA (1068bp) protein (356aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ddl; D-alanine-D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Clostridium sp. MSTE9 RepID=J0X0T4_9CLOT
L3_106_000M1_scaffold_2165_18
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15224..16012
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWG3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO60110.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
L3_106_000M1_scaffold_2165_19
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16325..16474
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=2 Tax=environmental samples RepID=R5GNL1_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
hypothetical protein
L3_106_000M1_scaffold_2165_20
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16495..16806
DNA (312bp) protein (104aa)
preprotein translocase subunit SecE n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003707147
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
preprotein translocase, SecE subunit, bacterial
L3_106_000M1_scaffold_2165_21
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16828..17349
DNA (522bp) protein (174aa)
antitermination factor NusG n=1 Tax=Clostridium sporosphaeroides RepID=UPI000368F982
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
NusG antitermination factor
L3_106_000M1_scaffold_2165_22
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17535..17960
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A7Q6_9CLOT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
LSU ribosomal protein L11P
L3_106_000M1_scaffold_2165_23
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18016..18717
DNA (702bp) protein (234aa)
50S ribosomal protein L1 n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037632D6
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
LSU ribosomal protein L1P
L3_106_000M1_scaffold_2165_24
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18975..19508
DNA (534bp) protein (178aa)
50S ribosomal protein L10 n=1 Tax=Clostridium sp. MSTE9 RepID=J0N5N9_9CLOT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
50S ribosomal protein L10
L3_106_000M1_scaffold_2165_25
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19574..19951
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036980CF
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
50S ribosomal protein L7/L12
L3_106_000M1_scaffold_2165_26
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20139..20615)
DNA (477bp) protein (159aa)
PREDICTED: proline-rich transmembrane protein 2-like n=1 Tax=Chrysemys picta bellii RepID=UPI000388BD5F
Interferon-induced transmembrane protein.
Tax=BJP_IG2157_Clostridiales_35_16
L3_106_000M1_scaffold_2165_27
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20932..21402)
DNA (471bp) protein (157aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KIG7_9FIRM
Protein of unknown function (DUF2752).
Tax=BJP_IG2157_Clostridiales_35_16
L3_106_000M1_scaffold_2165_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21476..22828)
DNA (1353bp) protein (451aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium sp. MSTE9 RepID=J1HA05_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EJF42143.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_106_000M1_scaffold_2165_29
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23013..23675
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036FA465
Uncharacterized protein {ECO:0000313|EMBL:EJF42113.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_106_000M1_scaffold_2165_30
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23672..24802
DNA (1131bp) protein (377aa)
Exonuclease SbcCD D subunit n=1 Tax=Clostridium leptum CAG:27 RepID=R6P6X8_9CLOT
Exonuclease SbcCD D subunit {ECO:0000313|EMBL:CDC05672.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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