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L3_106_000M1_scaffold_2749

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2749_1
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..593)
DNA (591bp) protein (197aa)
YceG family protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N4F8_9CLOT
YceG family protein {ECO:0000313|EMBL:EJF41679.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Predicted periplasmic solute-binding protein
L3_106_000M1_scaffold_2749_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(590..1195)
DNA (606bp) protein (202aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Clostridium sp. MSTE9 RepID=J0NAS8_9CLOT
L3_106_000M1_scaffold_2749_3
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1218..1760)
DNA (543bp) protein (181aa)
DJ-1 family protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6NA67_9CLOT
DJ-1 family protein {ECO:0000313|EMBL:CDC05239.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
DJ-1 family protein
L3_106_000M1_scaffold_2749_4
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1792..2685)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003651B91
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EJF41714.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
N-acetyltransferase GCN5
L3_106_000M1_scaffold_2749_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2703..3632)
DNA (930bp) protein (310aa)
PF09924 family protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0WZG4_9CLOT
PF09924 family protein {ECO:0000313|EMBL:EJF41711.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_106_000M1_scaffold_2749_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3625..4302)
DNA (678bp) protein (226aa)
dTMP kinase {ECO:0000313|EMBL:EJF41669.1}; EC=2.7.4.9 {ECO:0000313|EMBL:EJF41669.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
thymidylate kinase (EC:2.7.4.9)
dTMP kinase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N4F0_9CLOT
L3_106_000M1_scaffold_2749_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4299..5069)
DNA (771bp) protein (257aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Thymidylate synthase ThyX n=2 Tax=Clostridium RepID=R6P5L5_9CLOT
thymidylate synthase, flavin-dependent
L3_106_000M1_scaffold_2749_8
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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5529..6401
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BB66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83025.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L3_106_000M1_scaffold_2749_9
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6551..6850)
DNA (300bp) protein (100aa)
Stress responsive A/B barrel domain protein n=5 Tax=Clostridiales RepID=A5KR31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20419.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
stress responsive alpha-beta barrel domain-containing protein
L3_106_000M1_scaffold_2749_10
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6864..7283)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS10607.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Predicted DNA-binding protein with PD1-like DNA-binding motif
L3_106_000M1_scaffold_2749_11
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7374..8591)
DNA (1218bp) protein (406aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
dinB; DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Clostridium leptum CAG:27 RepID=R6NGD9_9CLOT
L3_106_000M1_scaffold_2749_12
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8735..9880)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6DHS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA77427.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
toxic anion resistance family protein
L3_106_000M1_scaffold_2749_13
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9901..11070)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J3G9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS28643.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
5-bromo-4-chloroindolyl phosphate hydrolysis protein
L3_106_000M1_scaffold_2749_14
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11543..14152)
DNA (2610bp) protein (870aa)
ATP-dependent chaperone protein ClpB n=2 Tax=Clostridium RepID=A7VP05_9CLOT
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
ATP-dependent chaperone ClpB
L3_106_000M1_scaffold_2749_15
unknown

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comp(14605..14739)
DNA (135bp) protein (45aa)

This feature has no annotations

L3_106_000M1_scaffold_2749_16
Bifidobacterium biavatii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(16049..16876)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037D57C2
Uncharacterized protein {ECO:0000313|EMBL:KFI52303.1}; TaxID=1437608 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium biavatii DSM 23969.;"
hypothetical protein
L3_106_000M1_scaffold_2749_17
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16864..17649)
DNA (786bp) protein (262aa)
Putative CRISPR-associated endoribonuclease Cas6 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGD8_9CLOT
Putative CRISPR-associated endoribonuclease Cas6 {ECO:0000313|EMBL:EEG29469.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_106_000M1_scaffold_2749_18
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17646..18806)
DNA (1161bp) protein (387aa)
CRISPR-associated RAMP protein, Csm5 family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGD7_9CLOT
CRISPR-associated RAMP protein, Csm5 family {ECO:0000313|EMBL:EEG29468.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_106_000M1_scaffold_2749_19
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18803..19774)
DNA (972bp) protein (324aa)
CRISPR-associated RAMP protein, Csm4 family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGD6_9CLOT
CRISPR-associated RAMP protein, Csm4 family {ECO:0000313|EMBL:EEG29467.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_106_000M1_scaffold_2749_20
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19752..20432)
DNA (681bp) protein (227aa)
CRISPR-associated protein, Csm3 family n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AW52_SYNWW
hypothetical protein
CRISPR-associated protein, Csm3 family {ECO:0000313|EMBL:ABI69052.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
L3_106_000M1_scaffold_2749_21
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20445..20960)
DNA (516bp) protein (172aa)
CRISPR-associated protein, Csm2 family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGD4_9CLOT
CRISPR-associated protein, Csm2 family {ECO:0000313|EMBL:EEG29465.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_106_000M1_scaffold_2749_22
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20950..23202)
DNA (2253bp) protein (751aa)
CRISPR-associated protein, Csm1 family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGD3_9CLOT
CRISPR-associated protein, Csm1 family {ECO:0000313|EMBL:EEG29464.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
CRISPR-associated protein, Csm1 family
Displaying 22 items

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