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L3_106_000M1_scaffold_2950

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2950_1
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..415)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NVG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99936.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_106_000M1_scaffold_2950_2
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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1174..1746
DNA (573bp) protein (191aa)
Peptidase, S54 family {ECO:0000313|EMBL:EDN01878.1}; EC=3.4.21.- {ECO:0000313|EMBL:EDN01878.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Peptidase, S54 family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NPV3_9FIRM
rhomboid family protein
L3_106_000M1_scaffold_2950_3
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1830..2576)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XL61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07032.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_106_000M1_scaffold_2950_4
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

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comp(2595..3491)
DNA (897bp) protein (299aa)
Radical SAM protein n=1 Tax=Rhodobacter capsulatus B6 RepID=V8GVM1_RHOCA
glycyl-radical activating protein
Tax=RBG_13_Chloroflexi_52_14_curated
L3_106_000M1_scaffold_2950_5
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3504..5891)
DNA (2388bp) protein (796aa)
Pyruvate formate-lyase n=1 Tax=Clostridium novyi (strain NT) RepID=A0PY51_CLONN
Pyruvate formate-lyase {ECO:0000313|EMBL:KHK01733.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
pyruvate formate-lyase
L3_106_000M1_scaffold_2950_6
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5926..6864)
DNA (939bp) protein (313aa)
frk; putative fructokinase (EC:2.7.1.4)
Putative fructokinase {ECO:0000313|EMBL:BAK99885.1}; EC=2.7.1.4 {ECO:0000313|EMBL:BAK99885.1};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Putative fructokinase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KR62_OSCVS
L3_106_000M1_scaffold_2950_7
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6911..7915)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KR61_OSCVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK99884.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_106_000M1_scaffold_2950_8
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7929..8357)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KR63_OSCVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK99886.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_106_000M1_scaffold_2950_9
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8350..9216)
DNA (867bp) protein (289aa)
Putative hydrolase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KR64_OSCVS
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK99887.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_106_000M1_scaffold_2950_10
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9391..10398
DNA (1008bp) protein (336aa)
AraC family transcriptional regulator n=1 Tax=Clostridium intestinale URNW RepID=U2NN87_9CLOT
AraC family transcriptional regulator {ECO:0000313|EMBL:ERK30628.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
AraC family transcriptional regulator
L3_106_000M1_scaffold_2950_11
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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10747..12612
DNA (1866bp) protein (622aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00035DA714
Uncharacterized protein {ECO:0000313|EMBL:KEI45696.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
hypothetical protein
L3_106_000M1_scaffold_2950_12
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13001..13432
DNA (432bp) protein (144aa)
Transcriptional regulator, Rrf2 family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2D747_CLOS4
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:ERI98634.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
BadM/Rrf2 family transcriptional regulator
L3_106_000M1_scaffold_2950_13
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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13540..14856
DNA (1317bp) protein (439aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63951.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_106_000M1_scaffold_2950_14
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14923..15234
DNA (312bp) protein (104aa)
Thioredoxin n=2 Tax=Clostridium PF3_9CLOT">RepID=A7VPF3_9CLOT
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
thioredoxin
L3_106_000M1_scaffold_2950_15
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15322..16059)
DNA (738bp) protein (246aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EJF39977.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EJF39977.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000365EF23
N-acetylmuramoyl-L-alanine amidase
L3_106_000M1_scaffold_2950_16
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16112..16999)
DNA (888bp) protein (296aa)
Polysaccharide deacetylase n=1 Tax=Clostridium leptum CAG:27 RepID=R6MZD9_9CLOT
Polysaccharide deacetylase {ECO:0000313|EMBL:CDC04160.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
putative xylanase/chitin deacetylase
L3_106_000M1_scaffold_2950_17
unknown

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17129..17881
DNA (753bp) protein (251aa)

This feature has no annotations

L3_106_000M1_scaffold_2950_18
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17958..18929)
DNA (972bp) protein (324aa)
Hydrolase alpha/beta domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MWR2_9CLOT
Hydrolase alpha/beta domain protein {ECO:0000313|EMBL:CDC04163.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
putative lipase
L3_106_000M1_scaffold_2950_19
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19053..19751)
DNA (699bp) protein (233aa)
Channel protein, hemolysin III family n=2 Tax=Clostridium RepID=A7VSN9_9CLOT
Channel protein, hemolysin III family {ECO:0000313|EMBL:EDO61185.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_106_000M1_scaffold_2950_20
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19786..20703)
DNA (918bp) protein (306aa)
Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins (EC:1.97.1.4)
iron-sulfur protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036C6F2A
Radical SAM domain protein {ECO:0000313|EMBL:EJF39917.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_106_000M1_scaffold_2950_21
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20691..21545)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6P2H5_9CLOT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
conserved hypothetical protein TIGR00726
Displaying 21 items

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