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L3_106_000M1_scaffold_3778

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_3778_1
Anaerostipes sp. 3_2_56FAA, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..825
DNA (825bp) protein (275aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=665937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes sp. 3_2_56FAA.;"
anthranilate synthase, component II/anthranilate phosphoribosyltransferase (EC:2.4.2.18 4.1.3.27)
Anthranilate phosphoribosyltransferase n=2 Tax=Anaerostipes RepID=E5VXB9_9FIRM
L3_106_000M1_scaffold_3778_2
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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838..1617
DNA (780bp) protein (260aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
trpC; Indole-3-glycerol-phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5V752_9FIRM
L3_106_000M1_scaffold_3778_3
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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1614..2237
DNA (624bp) protein (208aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=3 Tax=Anaerostipes RepID=B0M9H8_9FIRM
L3_106_000M1_scaffold_3778_4
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2264..3457
DNA (1194bp) protein (398aa)
tryptophan synthase, beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Tryptophan synthase beta chain n=3 Tax=Clostridiales RepID=D4MVJ0_9FIRM
L3_106_000M1_scaffold_3778_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3444..4232
DNA (789bp) protein (263aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
trpA; Tryptophan synthase alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K882_9FIRM
L3_106_000M1_scaffold_3778_6
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4302..4988
DNA (687bp) protein (229aa)
precorrin-2 C20-methyltransferase/cobalt-factor II C20-methyltransferase (EC:2.1.1.130 2.1.1.151)
Precorrin-2 C20-methyltransferase cobalt-factor II C20-methyltransferase n=1 Tax=Clostridium sp. CAG:242 RepID=R6CGV6_9CLOT
Precorrin-2 C20-methyltransferase cobalt-factor II C20-methyltransferase {ECO:0000313|EMBL:CDA75923.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
L3_106_000M1_scaffold_3778_7
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5011..5478
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6L987_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EET62826.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
L3_106_000M1_scaffold_3778_8
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5612..5926
DNA (315bp) protein (105aa)
Thioredoxin n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EI39_9CLOT
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
thioredoxin
L3_106_000M1_scaffold_3778_9
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5930..6607)
DNA (678bp) protein (226aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EI40_9CLOT
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EEG28848.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
putative transcriptional regulator
L3_106_000M1_scaffold_3778_10
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6727..7614)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BRN8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI74488.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L3_106_000M1_scaffold_3778_11
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7611..8105)
DNA (495bp) protein (165aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:505 RepID=R7B7P4_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
ECF subfamily RNA polymerase sigma-24 factor
L3_106_000M1_scaffold_3778_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8286..8888)
DNA (603bp) protein (201aa)
Recombination protein RecR n=1 Tax=Clostridium sp. MSTE9 RepID=J0ND82_9CLOT
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
recombination protein RecR
L3_106_000M1_scaffold_3778_13
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(8892..9242)
DNA (351bp) protein (117aa)
Nucleoid-associated protein BN815_00062 n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YHW9_9FIRM
Nucleoid-associated protein BN815_00062 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
conserved hypothetical protein TIGR00103
L3_106_000M1_scaffold_3778_14
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9343..10989)
DNA (1647bp) protein (549aa)
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EDO60646.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EDO60646.1};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
DNA polymerase III, subunit gamma and tau n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUJ6_9CLOT
DNA polymerase III subunits gamma and tau
L3_106_000M1_scaffold_3778_15
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11577..12365
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A3U7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37518.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_106_000M1_scaffold_3778_16
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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comp(12420..14273)
DNA (1854bp) protein (618aa)
Ferrous iron transport protein B n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MDK4_9FIRM
Ferrous iron transport protein B {ECO:0000313|EMBL:CDB96675.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
feoB; fused ferrous iron transporter, protein B: GTP-binding protein ; membrane protein
L3_106_000M1_scaffold_3778_17
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14291..14815)
DNA (525bp) protein (175aa)
spore maturation protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036432D1
Transporter gate domain protein {ECO:0000313|EMBL:EDO62814.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Uncharacterized membrane protein
L3_106_000M1_scaffold_3778_18
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14808..15389)
DNA (582bp) protein (194aa)
Putative spore maturation protein A n=1 Tax=Clostridium sp. MSTE9 RepID=J1H022_9CLOT
Putative spore maturation protein A {ECO:0000313|EMBL:EJF38563.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
nucleoside recognition domain-containing protein
L3_106_000M1_scaffold_3778_19
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15557..15808
DNA (252bp) protein (84aa)
Transcriptional regulator, AbrB family n=1 Tax=Clostridium sp. MSTE9 RepID=J0N2F8_9CLOT
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:EJF38557.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
AbrB family transcriptional regulator
L3_106_000M1_scaffold_3778_20
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16083..16685)
DNA (603bp) protein (201aa)
F5/8 type C domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAA4_9CLOT
F5/8 type C domain protein {ECO:0000313|EMBL:EEG31596.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Displaying 20 items

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