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L3_106_000M1_scaffold_5185

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_5185_1
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..307)
DNA (306bp) protein (102aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5N5T7_CLOK5
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
L3_106_000M1_scaffold_5185_2
RLO_RIF03_38_15, RIF3, Bacteria

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499..975
DNA (477bp) protein (159aa)
D-tyrosyl-tRNA(Tyr) deacylase n=2 Tax=Clostridium kluyveri RepID=DTD_CLOK5
D-tyrosyl-tRNA(Tyr) deacylase
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
L3_106_000M1_scaffold_5185_3
BJP_IG2069_Clostridiales_42_11, Clostridiales, Clostridia, Firmicutes, Bacteria

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1211..1468
DNA (258bp) protein (86aa)
Putative iron-only hydrogenase system regulator n=1 Tax=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) RepID=J7ISK9_DESMD
iron-only hydrogenase system regulator
Tax=BJP_IG2069_Clostridiales_42_11
L3_106_000M1_scaffold_5185_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1465..2424
DNA (960bp) protein (320aa)
Iron-only hydrogenase maturation rSAM protein HydE n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EG68_9CLOT
Iron-only hydrogenase maturation rSAM protein HydE {ECO:0000313|EMBL:EEG29525.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
radical SAM domain protein
L3_106_000M1_scaffold_5185_5
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2474..3892
DNA (1419bp) protein (473aa)
Iron-only hydrogenase maturation rSAM protein HydG n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVU6_9CLOT
Iron-only hydrogenase maturation rSAM protein HydG {ECO:0000313|EMBL:EDO61096.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
thiH; thiamine biosynthesis protein ThiH
L3_106_000M1_scaffold_5185_6
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3965..5155
DNA (1191bp) protein (397aa)
Hydrogenase maturation GTPase HydF n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EG66_9CLOT
Hydrogenase maturation GTPase HydF {ECO:0000313|EMBL:EEG29523.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_106_000M1_scaffold_5185_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5320..6735)
DNA (1416bp) protein (472aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
putative aminopeptidase (EC:3.4.11.-)
aminopeptidase n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003692BE0
L3_106_000M1_scaffold_5185_8
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6728..7318)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035F0E59
Transglycosylase SLT domain protein {ECO:0000313|EMBL:EJF42581.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Lytic transglycosylase catalytic
L3_106_000M1_scaffold_5185_9
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7333..7926)
DNA (594bp) protein (198aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
coaE; dephospho-CoA kinase (EC:2.7.1.24)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036891B3
L3_106_000M1_scaffold_5185_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7919..8944)
DNA (1026bp) protein (342aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family n=1 Tax=Clostridium sp. MSTE9 RepID=J1HA80_9CLOT
ywlC; putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
L3_106_000M1_scaffold_5185_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8957..10039)
DNA (1083bp) protein (361aa)
peptide chain release factor 1 n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003769F35
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
bacterial peptide chain release factor 1 (bRF-1)
L3_106_000M1_scaffold_5185_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10087..10290)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003727C54
PF06107 family protein {ECO:0000313|EMBL:EJF42557.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_106_000M1_scaffold_5185_13
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10465..11481
DNA (1017bp) protein (339aa)
biotin-(acetyl-CoA carboxylase) ligase (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=2 Tax=Clostridium RepID=A7VZ87_9CLOT
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L3_106_000M1_scaffold_5185_14
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(11663..11818)
DNA (156bp) protein (52aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Glutamine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YNX0_9FIRM
glutaminyl-tRNA synthetase
Displaying 14 items

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