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L3_106_000M1_scaffold_230

Search features with annotation key words

Displaying items 1-30 of 112 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_230_1
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(274..1197)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MV73_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC03658.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L3_106_000M1_scaffold_230_2
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1213..2331)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QRT3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38535.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_106_000M1_scaffold_230_3
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2639..2758
DNA (120bp) protein (40aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=C0FRF1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94804.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_106_000M1_scaffold_230_4
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3054..3329
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6I5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38526.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_106_000M1_scaffold_230_5
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3336..4703
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QZZ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38524.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L3_106_000M1_scaffold_230_6
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

4706..5560
DNA (855bp) protein (285aa)
ParB-like protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TL51_9FIRM
ParB-like protein {ECO:0000313|EMBL:CDC74143.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
ParB-like partition proteins
L3_106_000M1_scaffold_230_7
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5574..5846
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AFY5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA50903.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
L3_106_000M1_scaffold_230_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5810..7516
DNA (1707bp) protein (569aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS67_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBK95936.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_106_000M1_scaffold_230_9

Not on your lists

comp(8164..9216)
DNA (1053bp) protein (351aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1489308 species="Bacteria; environmental samples.;" source="uncultured bacterium Ad_144_C12_contig1.;"
Glyceraldehyde 3-phosphate dehydrogenase n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6U0L7_9FIRM
glyceraldehyde-3-phosphate dehydrogenase, type I
L3_106_000M1_scaffold_230_10
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9439..11154)
DNA (1716bp) protein (572aa)
Putative stage II sporulation protein D n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I8R5_9FIRM
Putative stage II sporulation protein D {ECO:0000313|EMBL:CDE48005.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
sporulation protein
L3_106_000M1_scaffold_230_11
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11333..12064)
DNA (732bp) protein (244aa)
Uncharacterized protein n=2 Tax=Sutterella RepID=R5PTQ6_9BURK
glutamine amidotransferase
Tax=BJP_08E140C01_Clostridiales_46_19
L3_106_000M1_scaffold_230_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12061..12636)
DNA (576bp) protein (192aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
ppa; Inorganic pyrophosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IA11_9FIRM
L3_106_000M1_scaffold_230_13
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12672..13532)
DNA (861bp) protein (287aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Eubacterium sp. CAG:202 RepID=R6NA27_9FIRM
L3_106_000M1_scaffold_230_14
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13554..15947)
DNA (2394bp) protein (798aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZS1_CLOCD
L3_106_000M1_scaffold_230_15
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15966..17000)
DNA (1035bp) protein (345aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A076_MAHA5
phenylalanyl-tRNA synthetase subunit alpha
L3_106_000M1_scaffold_230_16
unknown

Not on your lists

comp(17312..17707)
DNA (396bp) protein (132aa)

This feature has no annotations

L3_106_000M1_scaffold_230_17
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17742..18455)
DNA (714bp) protein (238aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Holliday junction resolvase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IJ36_9FIRM
Holliday junction resolvase
L3_106_000M1_scaffold_230_18
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18466..18726)
DNA (261bp) protein (87aa)
UPF0297 protein Clo1100_2684 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IG96_9FIRM
UPF0297 protein Clo1100_2684 {ECO:0000313|EMBL:CDE50645.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L3_106_000M1_scaffold_230_19
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18795..19823)
DNA (1029bp) protein (343aa)
Hypothetical conserved protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7II77_9FIRM
Hypothetical conserved protein {ECO:0000313|EMBL:CDE51028.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L3_106_000M1_scaffold_230_20
unknown

Not on your lists

comp(19891..20052)
DNA (162bp) protein (54aa)

This feature has no annotations

L3_106_000M1_scaffold_230_21
unknown

Not on your lists

comp(20034..20522)
DNA (489bp) protein (163aa)

This feature has no annotations

L3_106_000M1_scaffold_230_22
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20624..21541)
DNA (918bp) protein (306aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Pseudouridine synthase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIE4_9FIRM
ribosomal large subunit pseudouridine synthase A
L3_106_000M1_scaffold_230_23
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21534..22007)
DNA (474bp) protein (158aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Lipoprotein signal peptidase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QAT6_9FIRM
lipoprotein signal peptidase
L3_106_000M1_scaffold_230_24
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22019..22282)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B172_CLOA9
Uncharacterized protein {ECO:0000313|EMBL:KEO82043.1}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
hypothetical protein
L3_106_000M1_scaffold_230_25
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22465..22998)
DNA (534bp) protein (178aa)
Cell division initiation protein DivIVA n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IBG5_9FIRM
Cell division initiation protein DivIVA {ECO:0000313|EMBL:CDE48930.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
DivIVA protein
L3_106_000M1_scaffold_230_26
Bacillus amyloliquefaciens, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23031..23768)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Bacillus amyloliquefaciens subsp. plantarum M27 RepID=K2HWQ9_BACAM
ylmH; putative RNA-binding protein ylmH
Uncharacterized protein {ECO:0000313|EMBL:AFJ61688.1}; TaxID=1126211 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus amyloliquefaciens Y2.;"
L3_106_000M1_scaffold_230_27
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23775..24374)
DNA (600bp) protein (200aa)
Cell division protein SepF n=1 Tax=Dorea sp. CAG:317 RepID=R6WWY6_9FIRM
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_106_000M1_scaffold_230_28
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24371..25093)
DNA (723bp) protein (241aa)
Alanine racemase domain protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IAK9_9FIRM
Alanine racemase domain protein {ECO:0000313|EMBL:CDE48934.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
alanine racemase
L3_106_000M1_scaffold_230_29
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25109..26347)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IBH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE48935.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_106_000M1_scaffold_230_30
unknown

Not on your lists

comp(26358..27335)
DNA (978bp) protein (326aa)

This feature has no annotations

Displaying items 1-30 of 112 in total

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