ggKbase home page

L3_106_000M1_scaffold_451

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_451_1
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(206..1969)
DNA (1764bp) protein (588aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Threonine--tRNA ligase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7II00_9FIRM
hypothetical protein
L3_106_000M1_scaffold_451_2
unknown

Not on your lists

2201..2305
DNA (105bp) protein (35aa)

This feature has no annotations

L3_106_000M1_scaffold_451_3
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2278..4080)
DNA (1803bp) protein (601aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BMN3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA62209.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
multidrug ABC transporter ATPase and permease
L3_106_000M1_scaffold_451_4
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4077..5873)
DNA (1797bp) protein (599aa)
ABC transporter related n=1 Tax=Clostridium sp. CAG:242 RepID=R6D3K7_9CLOT
ABC transporter related {ECO:0000313|EMBL:CDA78691.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ABC transporter ATP-binding protein/permease
L3_106_000M1_scaffold_451_5
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5926..7248)
DNA (1323bp) protein (441aa)
deoA; thymidine phosphorylase (EC:2.4.2.4)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IJ68_9FIRM
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:CDE50642.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_106_000M1_scaffold_451_6
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7245..7763)
DNA (519bp) protein (173aa)
DNA-deoxyinosine glycosylase n=1 Tax=Mycobacterium hassiacum DSM 44199 RepID=K5BJB4_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:KCZ55454.1}; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringensis.;"
T/U mismatch-specific DNA glycosylase
L3_106_000M1_scaffold_451_7
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7760..8791)
DNA (1032bp) protein (344aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IFB4_9FIRM
Sua5/YciO/YrdC/YwlC family protein
L3_106_000M1_scaffold_451_8
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8796..9875)
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZX11_MAHA5
peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_106_000M1_scaffold_451_9
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9869..10705)
DNA (837bp) protein (279aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
Release factor glutamine methyltransferase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67TD4_SYMTH
protoporphyrinogen oxidase
L3_106_000M1_scaffold_451_10
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10702..11826)
DNA (1125bp) protein (375aa)
protein-(glutamine-N5) methyltransferase n=1 Tax=Clostridium beijerinckii RepID=UPI0002DF1DC3
HemK family modification methylase {ECO:0000313|EMBL:AJG97105.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
HemK family modification methylase
L3_106_000M1_scaffold_451_11
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11915..12358)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4DBD5_DESAJ
Uncharacterized protein {ECO:0000313|EMBL:AFM43109.1}; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4).;"
L3_106_000M1_scaffold_451_12
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12355..12624)
DNA (270bp) protein (90aa)
DNA-binding protein n=1 Tax=Desulfitobacterium hafniense RepID=UPI0003786BCE
transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACL20524.1}; TaxID=272564 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain DCB-2 / DSM 10664).;"
L3_106_000M1_scaffold_451_13
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12739..12936)
DNA (198bp) protein (66aa)
50S ribosomal protein L31 n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VRF8_CLOSH
rpmE; 50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_106_000M1_scaffold_451_14
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12996..14396)
DNA (1401bp) protein (467aa)
Transcription termination factor Rho n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AH90_9CLOT
transcription termination factor Rho
Tax=BJP_IG2157_Clostridiales_52_13
L3_106_000M1_scaffold_451_15
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14531..15532)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7II94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51330.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
DNA modification methylase
L3_106_000M1_scaffold_451_16
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15885..16058)
DNA (174bp) protein (58aa)
30S ribosomal protein S21 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIP7_9FIRM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
30S ribosomal protein S21
L3_106_000M1_scaffold_451_17
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16214..17875)
DNA (1662bp) protein (554aa)
MiaB-like tRNA modifying enzyme n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IMI8_9FIRM
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:CDE51827.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
MiaB-like tRNA modifying enzyme
L3_106_000M1_scaffold_451_18
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17888..18631)
DNA (744bp) protein (248aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IKK2_9FIRM
hypothetical protein
L3_106_000M1_scaffold_451_19
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18654..19601)
DNA (948bp) protein (316aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
prmA2; ribosomal protein L11 methyltransferase PrmA (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IJ92_9FIRM
L3_106_000M1_scaffold_451_20

Not on your lists

comp(19677..20873)
DNA (1197bp) protein (399aa)
Chaperone protein DnaJ n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IC71_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1489308 species="Bacteria; environmental samples.;" source="uncultured bacterium Ad_144_C12_contig1.;"
molecular chaperone DnaJ
L3_106_000M1_scaffold_451_21
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20970..22796)
DNA (1827bp) protein (609aa)
Chaperone protein DnaK n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I899_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
chaperone protein DnaK
L3_106_000M1_scaffold_451_22

Not on your lists

comp(22869..23531)
DNA (663bp) protein (221aa)
Protein GrpE n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I917_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1489308 species="Bacteria; environmental samples.;" source="uncultured bacterium Ad_144_C12_contig1.;"
heat shock protein GrpE
L3_106_000M1_scaffold_451_23
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23494..24552)
DNA (1059bp) protein (353aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I9D4_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
heat-inducible transcription repressor HrcA
L3_106_000M1_scaffold_451_24
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24964..26091)
DNA (1128bp) protein (376aa)
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EET60187.1}; EC=1.3.99.22 {ECO:0000313|EMBL:EET60187.1};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LGI7_9FIRM
L3_106_000M1_scaffold_451_25
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26132..27922)
DNA (1791bp) protein (597aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Elongation factor 4 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IGK5_9FIRM
GTP-binding protein LepA
L3_106_000M1_scaffold_451_26
unknown

Not on your lists

comp(27953..28882)
DNA (930bp) protein (310aa)

This feature has no annotations

L3_106_000M1_scaffold_451_27
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28983..29594
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD50_9FIRM
hypothetical protein
Tax=GWD2_Desulfuromonadales_61_12_curated
L3_106_000M1_scaffold_451_28
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29640..30848)
DNA (1209bp) protein (403aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
D-alanine--D-alanine ligase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I558_9FIRM
DdlA2; D-alanine--D-alanine ligase
L3_106_000M1_scaffold_451_29
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30863..32413)
DNA (1551bp) protein (517aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I6W7_9FIRM
Mur ligase middle domain-containing protein
L3_106_000M1_scaffold_451_30
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32410..33204)
DNA (795bp) protein (265aa)
Hydrolase alpha/beta fold family protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I918_9FIRM
Hydrolase alpha/beta fold family protein {ECO:0000313|EMBL:CDE47017.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
alpha/beta hydrolase fold protein
Displaying items 1-30 of 80 in total

View Taxonomy