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L3_106_000M1_scaffold_1366

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1366_1
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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1..768
DNA (768bp) protein (256aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:ADL69119.1}; EC=6.3.5.3 {ECO:0000313|EMBL:ADL69119.1};; TaxID=580327 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM; 571 / NCIB 9385 / NCA 3814) (Clostridium thermosaccharolyticum).;"
Phosphoribosylformylglycinamidine synthase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) RepID=D9TPV0_THETC
L3_106_000M1_scaffold_1366_2
unknown

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comp(831..2006)
DNA (1176bp) protein (392aa)

This feature has no annotations

L3_106_000M1_scaffold_1366_3
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2338..2817
DNA (480bp) protein (160aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium termitidis CT1112 RepID=S0FVU2_9CLOT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EMS72683.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
sigma-70 family RNA polymerase sigma factor
L3_106_000M1_scaffold_1366_4
unknown

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2814..4889
DNA (2076bp) protein (692aa)

This feature has no annotations

L3_106_000M1_scaffold_1366_5
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4971..5354)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZCD8_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:AJG96780.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
transcriptional regulator, XRE family
L3_106_000M1_scaffold_1366_6
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5515..6819)
DNA (1305bp) protein (435aa)
Conserved domain protein n=1 Tax=Ruminococcus albus 8 RepID=E9S9P6_RUMAL
Conserved domain protein {ECO:0000313|EMBL:EGC04018.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
ATP-binding protein
L3_106_000M1_scaffold_1366_7
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6825..7544)
DNA (720bp) protein (240aa)
Response regulator receiver domain protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IAA8_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDE47452.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Response regulator of the LytR/AlgR family
L3_106_000M1_scaffold_1366_8
unknown

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7752..8279
DNA (528bp) protein (176aa)

This feature has no annotations

L3_106_000M1_scaffold_1366_9
unknown

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comp(8515..9114)
DNA (600bp) protein (200aa)

This feature has no annotations

L3_106_000M1_scaffold_1366_10
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(9663..9926)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YKI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15736.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_106_000M1_scaffold_1366_11
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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10614..12452
DNA (1839bp) protein (613aa)
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.4.12)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Z9Q1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD27212.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L3_106_000M1_scaffold_1366_12
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12449..13906
DNA (1458bp) protein (486aa)
Putative teichoic acid/polysaccharide glycosyl transferase n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7A636_9FIRM
Putative teichoic acid/polysaccharide glycosyl transferase {ECO:0000313|EMBL:CDD53755.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
dolichyl-phosphate-mannose-mannosyltransferase family protein
L3_106_000M1_scaffold_1366_13

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13903..15375
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZL92_9FIRM
Teichoic acid/polysaccharide glycosyl transferase {ECO:0000313|EMBL:AHF24132.1}; TaxID=1393580 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig46.;"
dolichyl-phosphate-mannose-mannosyltransferase family protein
L3_106_000M1_scaffold_1366_14
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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15372..16442
DNA (1071bp) protein (357aa)
Malate dehydrogenase (NAD) n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N716_SLAHD
malate dehydrogenase (NAD)
Malate dehydrogenase (NAD) {ECO:0000313|EMBL:ACV22701.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029; / RHS 1) (Peptococcus heliotrinreducens).;"
L3_106_000M1_scaffold_1366_15
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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16446..17765
DNA (1320bp) protein (440aa)
MATE efflux family protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X742_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:ENY91708.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
MATE efflux family protein
L3_106_000M1_scaffold_1366_16
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18185..19342
DNA (1158bp) protein (386aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
6-phosphofructokinase (EC:2.7.1.11)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M1M9_9FIRM
L3_106_000M1_scaffold_1366_17
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19771..20562
DNA (792bp) protein (264aa)
ABC transporter, permease protein n=2 Tax=Roseburia RepID=C0FVE3_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEG93444.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L3_106_000M1_scaffold_1366_18
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20538..21344
DNA (807bp) protein (269aa)
ABC transporter, ATP-binding protein n=2 Tax=Roseburia RepID=C0FVE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30229.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L3_106_000M1_scaffold_1366_19
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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21409..22377
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N8H7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS76302.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L3_106_000M1_scaffold_1366_20
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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22585..24084
DNA (1500bp) protein (500aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JJ78_9FIRM
histidine kinase
L3_106_000M1_scaffold_1366_21
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24089..24754
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M124_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64749.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
LuxR family transcriptional regulator
L3_106_000M1_scaffold_1366_22
Shuttleworthia satelles, Shuttleworthia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24981..25802
DNA (822bp) protein (274aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|SAAS:SAAS00029496};; TaxID=626523 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Shuttleworthia.;" source="Shuttleworthia satelles DSM 14600.;"
Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GA58_9FIRM
6-phosphogluconolactonase/Glucosamine-6-phosphateisomerase/deaminase
L3_106_000M1_scaffold_1366_23
Shuttleworthia sp. MSX8B, Shuttleworthia, Clostridiales, Clostridia, Firmicutes, Bacteria

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25820..26968
DNA (1149bp) protein (383aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=936574 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Shuttleworthia.;" source="Shuttleworthia sp. MSX8B.;"
N-acetylglucosamine 6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GA57_9FIRM
L3_106_000M1_scaffold_1366_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27113..28267
DNA (1155bp) protein (385aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Ketose-bisphosphate aldolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPP9_9FIRM
Ketose-bisphosphate aldolase {ECO:0000313|EMBL:EFB75245.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_106_000M1_scaffold_1366_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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28269..29114
DNA (846bp) protein (282aa)
Triose-phosphate isomerase {ECO:0000313|EMBL:EFB75246.1}; EC=5.3.1.1 {ECO:0000313|EMBL:EFB75246.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Triosephosphate isomerase (EC:5.3.1.1)
Triose-phosphate isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPQ0_9FIRM
L3_106_000M1_scaffold_1366_26
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29278..30774
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LGN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET60233.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Protein of unknown function DUF2088
L3_106_000M1_scaffold_1366_27
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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31025..31807
DNA (783bp) protein (261aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Rhodococcus rhodochrous RepID=UPI00037AE41D
L3_106_000M1_scaffold_1366_28
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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31976..33232
DNA (1257bp) protein (419aa)
Putative bacterial extracellular solute-binding protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTW5_9FIRM
Putative bacterial extracellular solute-binding protein {ECO:0000313|EMBL:CCY33185.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_106_000M1_scaffold_1366_29
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33453..34340
DNA (888bp) protein (296aa)
ABC transporter, permease protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6L9A0_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EET62839.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_106_000M1_scaffold_1366_30
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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34340..35926
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MGZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS70319.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Displaying items 1-30 of 36 in total

View Taxonomy