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L3_106_000M1_scaffold_2483

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2483_1
BJP_IG2103_Bacteroidetes_40_10, Bacteroidetes, Bacteria

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comp(3..779)
DNA (777bp) protein (259aa)
Penicillin-binding protein 4 n=1 Tax=Bacteroidales bacterium CF RepID=U5Q2C4_9BACT
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_40_10
L3_106_000M1_scaffold_2483_2
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(1061..1744)
DNA (684bp) protein (228aa)
Transcriptional regulator n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QU57_SPHPG
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AEV30304.1}; TaxID=158190 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
L3_106_000M1_scaffold_2483_3
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(1751..3361)
DNA (1611bp) protein (537aa)
mannitol 2-dehydrogenase (EC:1.1.1.67)
Mannitol dehydrogenase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RKA3_9FIRM
Mannitol dehydrogenase {ECO:0000313|EMBL:CDC48170.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_106_000M1_scaffold_2483_4
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3366..4451)
DNA (1086bp) protein (362aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
mannonate dehydratase (EC:4.2.1.8)
Mannonate dehydratase n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6L969_9FIRM
L3_106_000M1_scaffold_2483_5
unknown

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4685..5512
DNA (828bp) protein (276aa)

This feature has no annotations

L3_106_000M1_scaffold_2483_6
Coprobacter fastidiosus, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5986..8319
DNA (2334bp) protein (778aa)
Uncharacterized protein n=1 Tax=Coprobacter fastidiosus NSB1 RepID=U5CR43_9PORP
Uncharacterized protein {ECO:0000313|EMBL:ERM90622.1}; TaxID=1349822 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter fastidiosus NSB1.;"
hypothetical protein
L3_106_000M1_scaffold_2483_7
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8294..9760)
DNA (1467bp) protein (489aa)
putative two-component histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Putative two-component histidine kinase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KW54_OSCVS
L3_106_000M1_scaffold_2483_8
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9757..10446)
DNA (690bp) protein (230aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F7R2_DESDL
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGA69045.1}; Flags: Precursor;; TaxID=871963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
L3_106_000M1_scaffold_2483_9
Spirochaeta africana, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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10602..11402
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) RepID=H9UIG2_SPIAZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFG37305.1}; Flags: Precursor;; TaxID=889378 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692).;"
L3_106_000M1_scaffold_2483_10
Solobacterium moorei, Solobacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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11486..12019
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Solobacterium moorei F0204 RepID=E7MNS5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFW24274.1}; TaxID=706433 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Solobacterium.;" source="Solobacterium moorei F0204.;"
L3_106_000M1_scaffold_2483_11
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12166..13254
DNA (1089bp) protein (363aa)
Sugar kinases, ribokinase family (EC:2.7.1.45)
Kinase, PfkB family n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZMM9_9FIRM
Kinase PfkB family {ECO:0000313|EMBL:CDE51205.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_106_000M1_scaffold_2483_12
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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13295..14449
DNA (1155bp) protein (385aa)
oxidoreductase n=1 Tax=Paenibacillus massiliensis RepID=UPI00036E0C01
oxidoreductase
Oxidoreductase domain protein {ECO:0000313|EMBL:ACT04459.1}; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2).;"
L3_106_000M1_scaffold_2483_13
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

14637..15197
DNA (561bp) protein (187aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
YbaK/EbsC protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YJK9_9FIRM
hypothetical protein
L3_106_000M1_scaffold_2483_14
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15472..16395)
DNA (924bp) protein (308aa)
Pseudouridine-5'-phosphate glycosidase {ECO:0000256|HAMAP-Rule:MF_01876}; Short=PsiMP glycosidase {ECO:0000256|HAMAP-Rule:MF_01876};; EC=4.2.1.70 {ECO:0000256|HAMAP-Rule:MF_01876};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Pseudouridine-5'-phosphate glycosidase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWE2_9FIRM
Indigoidine synthase A family protein
L3_106_000M1_scaffold_2483_15
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16392..17315)
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66962.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ribokinase-like domain-containing protein
L3_106_000M1_scaffold_2483_16
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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18195..19469
DNA (1275bp) protein (425aa)
Filamentous hemagglutinin family N-terminal domain protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WC13_9CYAN
filamentous hemagglutinin family domain-containing protein
Filamentous hemagglutinin family N-terminal domain protein {ECO:0000313|EMBL:AFZ17930.1}; Flags: Precursor;; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
L3_106_000M1_scaffold_2483_17
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19561..20004)
DNA (444bp) protein (148aa)
FeS cluster assembly scaffold protein NifU, Clostridium type n=2 Tax=Clostridiales RepID=D4M4Z5_9FIRM
FeS cluster assembly scaffold protein NifU, Clostridium type
FeS cluster assembly scaffold protein NifU, Clostridium type {ECO:0000313|EMBL:CBL26307.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_106_000M1_scaffold_2483_18
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20026..21195)
DNA (1170bp) protein (390aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Eubacterium sp. CAG:38 RepID=R7H8X3_9FIRM
L3_106_000M1_scaffold_2483_19
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21249..21692)
DNA (444bp) protein (148aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UF91_RUMA7
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ADU20977.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_106_000M1_scaffold_2483_20
Prevotella multiformis, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(21788..22510)
DNA (723bp) protein (241aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=888743 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella multiformis DSM 16608.;"
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Pyridoxal kinase n=1 Tax=Prevotella multiformis DSM 16608 RepID=F0F468_9BACT
L3_106_000M1_scaffold_2483_21
unknown

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22706..22960
DNA (255bp) protein (85aa)

This feature has no annotations

L3_106_000M1_scaffold_2483_22
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(22869..23357)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LM76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88528.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
Predicted nucleotidyltransferases
L3_106_000M1_scaffold_2483_23
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23500..23976
DNA (477bp) protein (159aa)
SsrA-binding protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I7I9_9FIRM
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
SsrA-binding protein
L3_106_000M1_scaffold_2483_24
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24560..25399)
DNA (840bp) protein (280aa)
MATE efflux family protein DinF n=1 Tax=Butyrivibrio crossotus CAG:259 RepID=R5LRA1_9FIRM
MATE efflux family protein DinF {ECO:0000313|EMBL:CCY75621.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
MATE efflux family protein
Displaying 24 items

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