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L3_106_000M1_scaffold_2787

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_2787_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(254..913)
DNA (660bp) protein (220aa)
Uncharacterized domain HDIG n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z200_9CLOT
Uncharacterized domain HDIG {ECO:0000313|EMBL:CDD40215.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
uncharacterized domain HDIG
L3_106_000M1_scaffold_2787_2
Firmicutes bacterium CAG:194, Firmicutes, Bacteria

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comp(930..2228)
DNA (1299bp) protein (433aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263008 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:194.;"
Signal transduction histidine kinase (EC:2.7.13.3)
Signal transduction histidine kinase n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5QI49_9FIRM
L3_106_000M1_scaffold_2787_3
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2349..3017)
DNA (669bp) protein (223aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Clostridium sp. CAG:58 RepID=R6RAB6_9CLOT
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDC44815.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_106_000M1_scaffold_2787_4
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3023..4822)
DNA (1800bp) protein (600aa)
Na/Pi-cotransporter n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HB99_9FIRM
Na/Pi-cotransporter {ECO:0000313|EMBL:CDE36929.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
Na/Pi-cotransporter
L3_106_000M1_scaffold_2787_5
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5156..5806)
DNA (651bp) protein (217aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NAW3_9FIRM
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
phosphate uptake regulator, PhoU
L3_106_000M1_scaffold_2787_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5820..6575)
DNA (756bp) protein (252aa)
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702, ECO:0000313|EMBL:CBL10764.1};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) n=4 Tax=Roseburia RepID=D4KK84_9FIRM
L3_106_000M1_scaffold_2787_7
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6582..7415)
DNA (834bp) protein (278aa)
Phosphate ABC transporter, permease protein PstA n=2 Tax=Roseburia RepID=C0G049_9FIRM
Phosphate ABC transporter, permease protein PstA {ECO:0000313|EMBL:EEG91919.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
L3_106_000M1_scaffold_2787_8
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7412..8326)
DNA (915bp) protein (305aa)
Phosphate ABC transporter n=1 Tax=Eubacterium sp. CAG:38 RepID=R7H950_9FIRM
Phosphate ABC transporter {ECO:0000313|EMBL:CDE35910.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
phosphate ABC transporter permease PstC
L3_106_000M1_scaffold_2787_9
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8367..9407)
DNA (1041bp) protein (347aa)
Putative Phosphate-binding protein PstS 2 n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDE7_9FIRM
Putative Phosphate-binding protein PstS 2 {ECO:0000313|EMBL:EDM64464.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_106_000M1_scaffold_2787_10
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9608..10555)
DNA (948bp) protein (316aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I586_9FIRM
mraW; S-adenosyl-methyltransferase MraW
L3_106_000M1_scaffold_2787_11
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(10552..11832)
DNA (1281bp) protein (427aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
FolC bifunctional protein {ECO:0000313|EMBL:CDI40760.1}; EC=6.3.2.17 {ECO:0000313|EMBL:CDI40760.1};; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
FolC bifunctional protein n=2 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=U4QL06_TEPAE
L3_106_000M1_scaffold_2787_12
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12091..14802)
DNA (2712bp) protein (904aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I8R8_9FIRM
L3_106_000M1_scaffold_2787_13
unknown

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comp(14833..15000)
DNA (168bp) protein (56aa)

This feature has no annotations

L3_106_000M1_scaffold_2787_14
Firmicutes bacterium CAG:194, Firmicutes, Bacteria

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comp(15301..16146)
DNA (846bp) protein (282aa)
glycosyltransferase, family 14 (EC:2.4.2.26)
Glycosyltransferase family 14 n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5R9J0_9FIRM
Glycosyltransferase family 14 {ECO:0000313|EMBL:CCZ29572.1}; TaxID=1263008 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:194.;"
L3_106_000M1_scaffold_2787_15
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16299..17654)
DNA (1356bp) protein (452aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IE14_9FIRM
ATP-dependent protease ATPase subunit HslU {ECO:0000256|SAAS:SAAS00089650}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ATP-dependent protease HslVU, ATPase subunit
L3_106_000M1_scaffold_2787_16
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17656..18189)
DNA (534bp) protein (178aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ATP-dependent protease subunit HslV n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IDQ0_9FIRM
ATP-dependent protease subunit HslV
L3_106_000M1_scaffold_2787_17
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18440..19771)
DNA (1332bp) protein (444aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
trmFO; Methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase TrmFO (EC:2.1.1.74)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7ICF9_9FIRM
L3_106_000M1_scaffold_2787_18
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19768..21885)
DNA (2118bp) protein (706aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IDQ4_9FIRM
L3_106_000M1_scaffold_2787_19
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(22123..22929)
DNA (807bp) protein (269aa)
DNA protection single-strand-binding protein DprA n=2 Tax=Geobacter sulfurreducens RepID=D7AKT2_GEOSK
dprA; DNA protection single-strand-binding protein DprA
DNA polymerase {ECO:0000313|EMBL:KIE41602.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
Displaying 19 items

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