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L3_106_000M1_scaffold_3838

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_3838_1
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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comp(92..1465)
DNA (1374bp) protein (458aa)
Transporter n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6ERY7_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
Na+-dependent transporters of the SNF family
L3_106_000M1_scaffold_3838_2
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1570..2793)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. NC2007 RepID=UPI0003B4FBEA
Putative phosphohydrolase {ECO:0000313|EMBL:ETP72767.1}; Flags: Precursor;; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
hypothetical protein
L3_106_000M1_scaffold_3838_3
unknown

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3085..4266
DNA (1182bp) protein (394aa)

This feature has no annotations

L3_106_000M1_scaffold_3838_4
unknown

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4295..4393
DNA (99bp) protein (33aa)

This feature has no annotations

L3_106_000M1_scaffold_3838_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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4631..5146
DNA (516bp) protein (172aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40890.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_106_000M1_scaffold_3838_6
unknown

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5149..6447
DNA (1299bp) protein (433aa)

This feature has no annotations

L3_106_000M1_scaffold_3838_7
unknown

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6550..7710
DNA (1161bp) protein (387aa)

This feature has no annotations

L3_106_000M1_scaffold_3838_8
unknown

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7707..8957
DNA (1251bp) protein (417aa)

This feature has no annotations

L3_106_000M1_scaffold_3838_9
unknown

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8954..10060
DNA (1107bp) protein (369aa)

This feature has no annotations

L3_106_000M1_scaffold_3838_10
Caldicellulosiruptor obsidiansis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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10421..10981
DNA (561bp) protein (187aa)
uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TKE5_CALOO
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=608506 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47).;"
L3_106_000M1_scaffold_3838_11
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10984..11904
DNA (921bp) protein (307aa)
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Aspartate carbamoyltransferase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZ28_CLOCD
L3_106_000M1_scaffold_3838_12
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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11904..13187
DNA (1284bp) protein (428aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
dihydroorotase, multifunctional complex type (EC:3.5.2.3)
Dihydroorotase n=2 Tax=root RepID=R6M9P5_9FIRM
L3_106_000M1_scaffold_3838_13
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13201..14139
DNA (939bp) protein (313aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
orotidine 5''''-phosphate decarboxylase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3718E
L3_106_000M1_scaffold_3838_14
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

14153..14923
DNA (771bp) protein (257aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y7M8_9FIRM
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L3_106_000M1_scaffold_3838_15
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14916..15827
DNA (912bp) protein (304aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Dihydroorotate dehydrogenase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP85_9CLOT
dihydroorotate dehydrogenase
L3_106_000M1_scaffold_3838_16
unknown

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comp(15988..16257)
DNA (270bp) protein (90aa)

This feature has no annotations

L3_106_000M1_scaffold_3838_17
unknown

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comp(16250..16468)
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying 17 items

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