ggKbase home page

L3_106_008G1_scaffold_171

Search features with annotation key words

Displaying items 1-30 of 36 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_008G1_scaffold_171_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(330..719)
DNA (390bp) protein (130aa)
Uncharacterized protein n=8 Tax=Clostridium clostridioforme RepID=N9X197_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ67213.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_106_008G1_scaffold_171_2
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(875..1360)
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5F8B8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF07317.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L3_106_008G1_scaffold_171_3
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

1624..2910
DNA (1287bp) protein (429aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BLU9_THEXL
transposase IS116/IS110/IS902 family protein
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:AEF18300.1}; TaxID=858215 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 /; LX-11).;"
L3_106_008G1_scaffold_171_4
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3280..3462)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=N9YVJ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ31596.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
L3_106_008G1_scaffold_171_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4173..5126)
DNA (954bp) protein (318aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9WD16_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ60402.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_106_008G1_scaffold_171_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5123..6682)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9V6T0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ60403.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_106_008G1_scaffold_171_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6679..7653)
DNA (975bp) protein (325aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9V7D8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ60404.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
cobalamin synthesis protein P47K
L3_106_008G1_scaffold_171_8
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7697..9211)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9WRV2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ60405.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_106_008G1_scaffold_171_9
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9222..10019)
DNA (798bp) protein (266aa)
Uncharacterized protein n=11 Tax=Clostridium RepID=A8RNF9_9CLOT
Zinc ABC transporter permease {ECO:0000313|EMBL:ENZ42009.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
ABC transporter
L3_106_008G1_scaffold_171_10
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10006..10713)
DNA (708bp) protein (236aa)
Uncharacterized protein n=5 Tax=Clostridium RepID=A8RNG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF24561.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ABC transporter
L3_106_008G1_scaffold_171_11
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10737..11831)
DNA (1095bp) protein (365aa)
Zinc ABC transporter substrate-binding protein n=2 Tax=Clostridium bolteae RepID=R0B9C7_9CLOT
Zinc ABC transporter substrate-binding protein {ECO:0000313|EMBL:ENZ53149.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
periplasmic solute binding protein
L3_106_008G1_scaffold_171_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12014..12325)
DNA (312bp) protein (104aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9V7D4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ60409.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_106_008G1_scaffold_171_13
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12665..13099)
DNA (435bp) protein (145aa)
Fur family transcriptional regulator, ferric uptake regulator n=8 Tax=Clostridium RepID=N9WRU9_9CLOT
Fur family transcriptional regulator, ferric uptake regulator {ECO:0000313|EMBL:ENZ60410.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
ferric uptake regulator family protein
L3_106_008G1_scaffold_171_14
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13817..14074)
DNA (258bp) protein (86aa)
Uncharacterized protein n=10 Tax=Clostridium RepID=N9WFQ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX98279.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
GntR-like transcriptional regulator
L3_106_008G1_scaffold_171_15
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14086..15894)
DNA (1809bp) protein (603aa)
Type IV secretion system protein VirD4 n=2 Tax=Clostridium bolteae RepID=R0AYU0_9CLOT
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:ENZ53144.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
type IV secretion system protein VirD4
L3_106_008G1_scaffold_171_16
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15945..16928)
DNA (984bp) protein (328aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0B9D3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ53143.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_106_008G1_scaffold_171_17
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16942..19863)
DNA (2922bp) protein (974aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=N9ZP47_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ53142.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_106_008G1_scaffold_171_18
unknown

Not on your lists

comp(19985..20143)
DNA (159bp) protein (53aa)

This feature has no annotations

L3_106_008G1_scaffold_171_19
unknown

Not on your lists

comp(20172..20351)
DNA (180bp) protein (60aa)

This feature has no annotations

L3_106_008G1_scaffold_171_20
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20440..20931)
DNA (492bp) protein (164aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0ALS5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ53140.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_106_008G1_scaffold_171_21
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21205..21465)
DNA (261bp) protein (87aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9WFQ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJJ65316.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
hypothetical protein
L3_106_008G1_scaffold_171_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21480..21740)
DNA (261bp) protein (87aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9WD04_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ60417.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_106_008G1_scaffold_171_23
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21755..22696)
DNA (942bp) protein (314aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9V6R8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ60418.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_106_008G1_scaffold_171_24
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22785..23063)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=N9ZPK9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ41731.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
L3_106_008G1_scaffold_171_25
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23378..23968)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7Z7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM51054.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
MTH538 TIR-like domain (DUF1863).
L3_106_008G1_scaffold_171_26
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23996..25423)
DNA (1428bp) protein (476aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C610_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG72544.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L3_106_008G1_scaffold_171_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25553..26692)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1QWV1_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP53473.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
hypothetical protein
L3_106_008G1_scaffold_171_28
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26761..28665)
DNA (1905bp) protein (635aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IJE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS22060.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
Tn7-like transposition protein D
L3_106_008G1_scaffold_171_29
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28668..30167)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IJD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS22059.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
TniB protein
L3_106_008G1_scaffold_171_30
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30133..32319)
DNA (2187bp) protein (729aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IJV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS22058.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
HMG-I and HMG-Y, DNA-binding
Displaying items 1-30 of 36 in total

View Taxonomy