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L3_106_079G1_scaffold_56

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Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_079G1_scaffold_56_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

44..1081
DNA (1038bp) protein (346aa)
Uncharacterized protein n=5 Tax=root RepID=A7B1Q9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78181.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
putative inactivated transposase
L3_106_079G1_scaffold_56_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1284..1811
DNA (528bp) protein (176aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BNP3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49430.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
GNAT family acetyltransferase
L3_106_079G1_scaffold_56_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1907..2392)
DNA (486bp) protein (162aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
mgsA; methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=4 Tax=Clostridiales RepID=A7B2G0_RUMGN
L3_106_079G1_scaffold_56_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2438..4012)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BPQ0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16800.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
membrane protein
L3_106_079G1_scaffold_56_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4009..4707)
DNA (699bp) protein (233aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TPP1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD16801.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_106_079G1_scaffold_56_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4888..5766)
DNA (879bp) protein (293aa)
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases (EC:1.1.1.60 1.1.1.31)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2F7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49434.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_106_079G1_scaffold_56_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5781..6446)
DNA (666bp) protein (222aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B2F6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77927.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_106_079G1_scaffold_56_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6465..8474)
DNA (2010bp) protein (670aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Topoisomerase IA (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2F5_RUMGN
L3_106_079G1_scaffold_56_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8506..10614)
DNA (2109bp) protein (703aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFZ0_9FIRM
L3_106_079G1_scaffold_56_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10683..11540)
DNA (858bp) protein (286aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BQN2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49135.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted esterase of the alpha-beta hydrolase superfamily
L3_106_079G1_scaffold_56_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11744..13378
DNA (1635bp) protein (545aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2F1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49136.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_106_079G1_scaffold_56_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13435..14049)
DNA (615bp) protein (205aa)
Fructose-2,6-bisphosphatase (EC:5.4.2.1)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TQ10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49137.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_106_079G1_scaffold_56_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14210..14689
DNA (480bp) protein (160aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
LuxS protein involved in autoinducer AI2 synthesis (EC:4.4.1.21)
S-ribosylhomocysteine lyase n=4 Tax=Clostridiales RepID=A7B2E8_RUMGN
L3_106_079G1_scaffold_56_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14704..15366
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2E7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77918.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted membrane protein
L3_106_079G1_scaffold_56_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15371..15925)
DNA (555bp) protein (185aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2E6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49140.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_106_079G1_scaffold_56_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15941..17629)
DNA (1689bp) protein (563aa)
Type II secretory pathway, pullulanase PulA and related glycosidases (EC:3.2.1.-)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BPV5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49141.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_106_079G1_scaffold_56_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17641..18642)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2E4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49142.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_106_079G1_scaffold_56_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18811..19137
DNA (327bp) protein (109aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2E3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49143.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Protein of unknown function (DUF1292).
L3_106_079G1_scaffold_56_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19139..20971)
DNA (1833bp) protein (611aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2E2_RUMGN
L3_106_079G1_scaffold_56_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20984..22444)
DNA (1461bp) protein (487aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
glutamyl-tRNA synthetase, bacterial family (EC:6.1.1.17)
Glutamate--tRNA ligase n=3 Tax=Clostridiales RepID=F7JUX4_9FIRM
L3_106_079G1_scaffold_56_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22491..22931)
DNA (441bp) protein (147aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2D9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49147.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_106_079G1_scaffold_56_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22928..23683)
DNA (756bp) protein (252aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2D8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49148.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
membrane protein
L3_106_079G1_scaffold_56_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23673..24614)
DNA (942bp) protein (314aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2D7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49149.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_106_079G1_scaffold_56_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24708..26141)
DNA (1434bp) protein (478aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=3 Tax=Clostridiales RepID=R5UG10_9FIRM
L3_106_079G1_scaffold_56_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26162..27589)
DNA (1428bp) protein (476aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPQ7_9FIRM
L3_106_079G1_scaffold_56_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27603..28310)
DNA (708bp) protein (236aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=3 Tax=Clostridiales RepID=F7JUY1_9FIRM
L3_106_079G1_scaffold_56_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28539..29138)
DNA (600bp) protein (200aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=V8BNR4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49154.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PTS system fructose subfamily transporter subunit IIC
L3_106_079G1_scaffold_56_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29435..29767)
DNA (333bp) protein (111aa)
PTS system fructose-specific EIIABC component n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U9B7_9FIRM
PTS system fructose-specific EIIABC component {ECO:0000313|EMBL:CCZ67776.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4)
L3_106_079G1_scaffold_56_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29780..30700)
DNA (921bp) protein (307aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=4 Tax=Clostridiales RepID=A7B2C9_RUMGN
L3_106_079G1_scaffold_56_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30697..31389)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67778.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
Displaying items 1-30 of 66 in total

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